Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2103
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    28   1.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   6.3  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   6.3  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.3  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.4  

>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 99  TSYKPQPAPTSFSYPQSAAHKPSLSGWQEKPATN 200
           TS +  PAPT+  +P   +  PS+S  Q +PA N
Sbjct: 547 TSQQLNPAPTAMPHPNITSPSPSISVTQ-RPAVN 579


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 114 QPAPTSFSYPQ 146
           QPAPT FSYP+
Sbjct: 655 QPAPTEFSYPE 665


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 387 ADYLF*FVGSSNTEEHYFFEQFLDTWVVVL-AGCSL 283
           ADY F  +      EH F  Q +DTW+  + A C L
Sbjct: 210 ADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPL 245


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 267 SQTGLSGNSQPKQPPKYQETVQRNN 341
           S T ++  SQP+ PP+  E++Q +N
Sbjct: 767 SSTPMNYVSQPESPPQSYESIQNDN 791


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 413 IGRWVRMTLLIICSSLLGVRILRSIISLNSFLILGW 306
           IGRWV    L  C  +     LRS+I L++     W
Sbjct: 393 IGRWVLTNQLRKCGIIGATHPLRSVIPLDNIFCNIW 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,647
Number of Sequences: 5004
Number of extensions: 47489
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)