Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2095
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    42   5e-06
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 42.3 bits (95), Expect = 5e-06
 Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = +1

Query: 433 MSLTAEYEADGKLLILQIKGKGDALINCVNVDVEIESKLNQVK-DNNGKDHLKLGTPSYK 609
           +   A+Y+ +GK+L+L ++G G +  N    D++  + +   K + NG+ +L++   + K
Sbjct: 125 VDFVADYKIEGKVLLLPVRGAGKS--NITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVK 182

Query: 610 YKIEKTTFDLKNLFNGKQRIG 672
           +   K     +NLF+G + +G
Sbjct: 183 FNPAKVKLRFENLFDGNKELG 203


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 639 EKLVQRETKNWLTQPCSLPMENWQQLM 719
           E++ Q+   +W+  PCS     W   M
Sbjct: 69  ERIRQKAAGHWVIHPCSSFRFYWDLCM 95


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 639 EKLVQRETKNWLTQPCSLPMENWQQLM 719
           E++ Q+   +W+  PCS     W   M
Sbjct: 69  ERIRQKAAGHWVIHPCSSFRFYWDLCM 95


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 639 EKLVQRETKNWLTQPCSLPMENWQQLM 719
           E++ Q+   +W+  PCS     W   M
Sbjct: 69  ERIRQKAAGHWVIHPCSSFRFYWDLCM 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,482
Number of Sequences: 438
Number of extensions: 2951
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)