Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2089
(700 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 24 1.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 2.8
DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein ... 22 4.9
AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein ... 22 4.9
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 8.5
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 8.5
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 8.5
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 8.5
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 8.5
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 8.5
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 8.5
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 317 NGFPSSSLYAPTPRFTFLGCVSFLYASVM 231
N P S Y FLGC FL+A+++
Sbjct: 283 NSLPKVS-YIKASEIWFLGCTIFLFAAMV 310
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 2.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 204 DGSARCNLRHYRSIQEG 254
DG AR N+ H++ I+ G
Sbjct: 535 DGPARYNIIHFKQIEPG 551
>DQ855487-1|ABH88174.1| 125|Apis mellifera chemosensory protein 6
protein.
Length = 125
Score = 22.2 bits (45), Expect = 4.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 83 KLSNTGKIITNYVVLLKDE 27
++ G+I+TNY+ + DE
Sbjct: 32 RILQNGRILTNYIKCMLDE 50
>AJ973402-1|CAJ01449.1| 125|Apis mellifera hypothetical protein
protein.
Length = 125
Score = 22.2 bits (45), Expect = 4.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 83 KLSNTGKIITNYVVLLKDE 27
++ G+I+TNY+ + DE
Sbjct: 32 RILQNGRILTNYIKCMLDE 50
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -2
Query: 588 VVSPSRRREPDLLCLSVVFRYELESESECASAGQCLYSTVAPIFDDRT 445
++ R RE + L ++ YEL E G + +P DR+
Sbjct: 44 LIQQEREREHERLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDRS 91
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -2
Query: 588 VVSPSRRREPDLLCLSVVFRYELESESECASAGQCLYSTVAPIFDDRT 445
++ R RE + L ++ YEL E G + +P DR+
Sbjct: 44 LIQQEREREHERLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDRS 91
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -2
Query: 588 VVSPSRRREPDLLCLSVVFRYELESESECASAGQCLYSTVAPIFDDRT 445
++ R RE + L ++ YEL E G + +P DR+
Sbjct: 44 LIQQEREREHERLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDRS 91
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -2
Query: 588 VVSPSRRREPDLLCLSVVFRYELESESECASAGQCLYSTVAPIFDDRT 445
++ R RE + L ++ YEL E G + +P DR+
Sbjct: 44 LIQQEREREHERLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDRS 91
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -2
Query: 588 VVSPSRRREPDLLCLSVVFRYELESESECASAGQCLYSTVAPIFDDRT 445
++ R RE + L ++ YEL E G + +P DR+
Sbjct: 44 LIQQEREREHERLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDRS 91
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -2
Query: 588 VVSPSRRREPDLLCLSVVFRYELESESECASAGQCLYSTVAPIFDDRT 445
++ R RE + L ++ YEL E G + +P DR+
Sbjct: 44 LIQQEREREHERLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDRS 91
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.4 bits (43), Expect = 8.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -2
Query: 588 VVSPSRRREPDLLCLSVVFRYELESESECASAGQCLYSTVAPIFDDRT 445
++ R RE + L ++ YEL E G + +P DR+
Sbjct: 44 LIQQEREREHERLMKKMILEYELRRIREIEKLGSERSKSRSPDSRDRS 91
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,624
Number of Sequences: 438
Number of extensions: 4182
Number of successful extensions: 31
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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