Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2084
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    27   0.12 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.84 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.84 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.8  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 195 PLVAKMPDWTWMLFSALFGAVSALTVPL 278
           PL+A  PDWTW       G  SA  + +
Sbjct: 100 PLLAPYPDWTWAKNENCSGITSAYKIEI 127


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 198 LVAKMPDWTWMLFSALFGAVSALTVPL 278
           L+   PDW+W  +    G VSA  + +
Sbjct: 107 LLQPYPDWSWANYKDCSGIVSAYKIAI 133


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 198 LVAKMPDWTWMLFSALFGAVSALTVPL 278
           L+   PDW+W  +    G VSA  + +
Sbjct: 107 LLQPYPDWSWANYKDCSGIVSAYKIAI 133


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 195 PLVAKMPDWTWMLFSALFGAVSALTV 272
           PL+   PDW++  +    G VSA  +
Sbjct: 108 PLLRPYPDWSFAKYEDCSGIVSAFKI 133


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 195 PLVAKMPDWTWMLFSALFGAVSA 263
           PL+   PDW++  +    G VSA
Sbjct: 102 PLLQPYPDWSFAKYDDCSGIVSA 124


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 195 PLVAKMPDWTWMLFSALFGAVSA 263
           PL+   PDW++  +    G VSA
Sbjct: 102 PLLQPYPDWSFAKYDDCSGIVSA 124


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 195 PLVAKMPDWTWMLFSALFGAVSA 263
           PL+   PDW++  +    G VSA
Sbjct: 102 PLLQPYPDWSFAKYDDCSGIVSA 124


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 213 PDWTWMLFSALFGAVSALTVPLLLLMY 293
           P +T  +  +LFG +     PL++++Y
Sbjct: 196 PTYTHEITYSLFGMIMMYWFPLVVIIY 222


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 188 QNSAGSQNAGLDLDVVFGAIRSCVCANC 271
           QNSA + N+ L  D        C C +C
Sbjct: 84  QNSASTYNSFLSSDSASSGNVYCKCDDC 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,444
Number of Sequences: 438
Number of extensions: 4041
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)