Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2076
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.57 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.57 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.3  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   2.3  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 408 YLIPRIFIFIYFLNLLWSYTNNSR 479
           Y+IP IFI +++  LL S  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 408 YLIPRIFIFIYFLNLLWSYTNNSR 479
           Y+IP IFI +++  LL S  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 334 NKLKTNKRNPSDGVTPER 387
           NK K NK +  DG TP +
Sbjct: 211 NKKKKNKEDEDDGATPRK 228


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 SASFSVWNKPLGGYQRIGRRKNSYCN 209
           S +F ++ + L G+Q +  +KNS  N
Sbjct: 48  SENFGIFKRALMGFQGVRGKKNSIIN 73


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 SASFSVWNKPLGGYQRIGRRKNSYCN 209
           S +F ++ + L G+Q +  +KNS  N
Sbjct: 49  SENFGIFKRALMGFQGVRGKKNSIIN 74


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 SASFSVWNKPLGGYQRIGRRKNSYCN 209
           S +F ++ + L G+Q +  +KNS  N
Sbjct: 48  SENFGIFKRALMGFQGVRGKKNSIIN 73


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 SASFSVWNKPLGGYQRIGRRKNSYCN 209
           S +F ++ + L G+Q +  +KNS  N
Sbjct: 48  SENFGIFKRALMGFQGVRGKKNSIIN 73


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 408 YLIPRIFIFIYFLNLLWSYTNNSRPKLAKSV 500
           Y+IP + + +  L +LW  + ++   +A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 338 LFYTKVQVFCLSIEALRSLPGQLVENINGLHFEPSTHF 225
           L   K + F  SI+A   L    ++    L  +P+THF
Sbjct: 654 LMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNTHF 691


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 405 FYLIPRIFIFIYFLNL 452
           F+LIP +FI + ++ +
Sbjct: 213 FFLIPMVFIAVLYIRI 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,195
Number of Sequences: 438
Number of extensions: 4186
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)