Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2065
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       77   1e-16
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.53 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 77.4 bits (182), Expect = 1e-16
 Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
 Frame = +2

Query: 347 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 526
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  AQT
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242

Query: 527 GSGKTLAYILPAIVHINNQP----PIRRGDGPIALVLAPTXKLAQQIQQVAADFGHTSYV 694
           GSGKT A+ +P I  +  +            P  ++++PT +L  QI Q    F   S +
Sbjct: 243 GSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSIL 302

Query: 695 R 697
           +
Sbjct: 303 K 303


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 454 TDAHSSSRLADSYVWKEFSWRSPNGF 531
           +D+ +  +L + Y WK   +  PNG+
Sbjct: 16  SDSQAQEKLKNIYSWKALEFAFPNGY 41


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 244 PIWASHVLPSREFFFP 197
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 628 RQDQSNRTITSPNRRLVIYVHNCW 557
           +Q QS +TIT     +VI    CW
Sbjct: 250 KQVQSRKTITRMLSAVVITFFICW 273


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 78  TGIIAVETVVPNLEEATNSA 137
           T + A   V P +EE TN+A
Sbjct: 412 TALGAAALVAPGMEEPTNTA 431


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 244 PIWASHVLPSREFFFP 197
           P+W  H+   R   FP
Sbjct: 634 PVWGRHIYDGRAMGFP 649


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 305 KRSPYEVEEYRNKHEVTV 358
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,307
Number of Sequences: 438
Number of extensions: 4235
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)