Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2062
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   7.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 181 HHLDPGEEALEVTEQHPDAFRRDHQSVSL 95
           HH+D  E   E+ E  PD   + ++ V +
Sbjct: 165 HHMDSVEYKPEIMEYKPDVEEQRYKQVEI 193


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 174 RWCTWTRRPAER 209
           RWCTW+    E+
Sbjct: 387 RWCTWSEGDLEK 398


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 174 RWCTWTRRPAER 209
           RWCTW+    E+
Sbjct: 387 RWCTWSEGDLEK 398


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 174 RWCTWTRRPAER 209
           RWCTW+    E+
Sbjct: 387 RWCTWSEGDLEK 398


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = +1

Query: 289 MSELRQFLPHESPSSNHVERARHCDYISEPTQHN 390
           + +L  ++PHE    +  +R   CD + +  +++
Sbjct: 110 VQKLDTWVPHELKEKHLTQRINSCDLLKKRNEND 143


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 611 SNKPLKMKVLDDPPQMTKAALIKAXPGS 694
           +N+P   K  D     ++A  +KA PGS
Sbjct: 873 NNQPTMNKCSDRKRPASQATSVKAEPGS 900


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 364 NHSVWLVQHDLNL 326
           N+S W + HD NL
Sbjct: 204 NYSGWYLNHDYNL 216


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 364 NHSVWLVQHDLNL 326
           N+S W + HD NL
Sbjct: 204 NYSGWYLNHDYNL 216


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/39 (15%), Positives = 20/39 (51%)
 Frame = +2

Query: 320  NPQVQIMLNEPDTVIISLNQHSIMEPKVIGFSVYKMPKF 436
            +PQ+ +     +++ + +  H      + G++++  P+F
Sbjct: 1369 SPQITLTATTTNSLTMKVRPHPTDNAPIHGYTIHYKPEF 1407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,990
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)