Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2061
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 338 YHYLHHYRLNLRKLIGKI 391
           YH L HYR  L++ I  I
Sbjct: 137 YHPLRHYRSGLKRAIRSI 154


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +1

Query: 388 NMLYNFKY---LIWISKTYTTGESSEVLFANQEEKSLVS 495
           N +Y  ++   LIW    Y + E S  +  N  +  LVS
Sbjct: 85  NQIYGGQFVRDLIWTPTVYVSNEPSSAITGNNVKDVLVS 123



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 644 KLKACNGFFSMEYYI 688
           KL    GFF M+YYI
Sbjct: 226 KLAREMGFFMMDYYI 240


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 253 IKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWIS 426
           IKY    +++   L I   +  I AAI  P+   L    ++   + + YN  ++I+ S
Sbjct: 292 IKYAKHKNNRRVWLTIL-LVWAISAAIGSPIVLGLNNTPDRTPDQCLFYNTDFIIYSS 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,340
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)