Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2056
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 285  LSSPSFSATALMLSHSPQRYN 223
            L   S  ATALML H+P  Y+
Sbjct: 1253 LFKDSSPATALMLQHAPPAYS 1273


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 601 IPCCARSSDISAQSVVFPHPVGPVSTVSSPRLWPP 497
           +PC    +  +A++VV P  +G   T   P  W P
Sbjct: 389 LPCREVEAAATARNVVAPFLIGSRRTSPPPEDWKP 423


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 514 PRLWPPSSRVSAGNLRHLTPRTLSI 440
           PR  PPS + S    R  TPR  S+
Sbjct: 396 PRQTPPSRKESGRRRRRRTPRYNSV 420


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 288 HLSSPSFSATALMLSHSPQRYNF 220
           H S+P+F + A +   +P  +NF
Sbjct: 288 HTSTPNFLSEAKIFPPTPGSFNF 310


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 549 GKTTLCAEISLD 584
           GKTT C E SLD
Sbjct: 167 GKTTACFEPSLD 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,737
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)