Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2049
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 39  PHYNWCNQEVV 71
           P++NW NQ+V+
Sbjct: 838 PYWNWSNQDVI 848


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 381 RFEIAKKEKKSXTNYVYLHNVCL*QYQFILRTPQCCVWRIRKNGRQ 244
           +FE  K+ KKS  +   L N  +  Y+  L+  +C  +  + NG +
Sbjct: 119 KFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCSTY--QSNGEE 162


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 320 YVYNNTNSY*EHHNVVYGEL 261
           Y Y+N N+Y  ++N  Y +L
Sbjct: 89  YKYSNYNNYNNNYNTNYKKL 108


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 320 YVYNNTNSY*EHHNVVYGEL 261
           Y Y+N N+Y  ++N  Y +L
Sbjct: 89  YKYSNYNNYNNNYNTNYKKL 108


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 320 YVYNNTNSY*EHHNVVYGEL 261
           Y Y+N N+Y  ++N  Y +L
Sbjct: 89  YKYSNYNNYNNNYNTNYKKL 108


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 320 YVYNNTNSY*EHHNVVYGEL 261
           Y Y+N N+Y  ++N  Y +L
Sbjct: 89  YKYSNYNNYNNNYNTNYKKL 108


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 320 YVYNNTNSY*EHHNVVYGEL 261
           Y Y+N N+Y  ++N  Y +L
Sbjct: 89  YKYSNYNNYNNNYNTNYKKL 108


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 320 YVYNNTNSY*EHHNVVYGEL 261
           Y Y+N N+Y  ++N  Y +L
Sbjct: 89  YKYSNYNNYNNNYNTNYKKL 108


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 320 YVYNNTNSY*EHHNVVYGEL 261
           Y Y+N N+Y  ++N  Y +L
Sbjct: 89  YKYSNYNNYNNNYNTNYKKL 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,162
Number of Sequences: 438
Number of extensions: 2744
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)