Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2044
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.3  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   9.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 136 HSGLHAATQHMAARASCPH 192
           HS +HA   H  + A+ PH
Sbjct: 423 HSHIHATPHHHHSHAATPH 441


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 265 GRSLKQTAARSDVDSSYTVVGAWVGVDNLPAR 170
           G  L QT A S +    +    W+G+D +P R
Sbjct: 200 GHHLIQTFAPSTLVVMLSWFSFWLGLDAIPGR 231


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 321 RHDKESVLRTXGRDVGDSGVAP 386
           + DKE  LR    + G  GVAP
Sbjct: 50  KFDKEGRLRAINPEYGFFGVAP 71


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 185 VHTYPGPDNRVRTVDVRTSGGL 250
           +HT    DN++RTV  +   GL
Sbjct: 385 LHTLELSDNKLRTVGAQLFNGL 406


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +1

Query: 133 PHSGLHAATQHMAARASCPHLPRPRQPCTNCRRQNE 240
           PH  L    +         ++P+PR P    RR+ E
Sbjct: 112 PHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPE 147


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 113 LQCGDTVLIVDSTLPRNTWPRGQVVHTYPGPD 208
           L  GD  +    T+   T+   +  H YP PD
Sbjct: 427 LASGDYTIPAGCTVVIGTFKLHRQPHIYPNPD 458


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 115 AVWGYRPHSGLHAATQHMAAR 177
           A+W   PH     +T H+ A+
Sbjct: 99  ALWSLVPHMAWQLSTAHLLAQ 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,680
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)