Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2040
(620 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein. 27 0.19
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 26 0.26
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 25 0.45
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 1.0
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 24 1.0
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 2.4
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 4.2
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 5.5
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 9.7
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 9.7
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 9.7
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 9.7
>DQ435333-1|ABD92648.1| 135|Apis mellifera OBP16 protein.
Length = 135
Score = 26.6 bits (56), Expect = 0.19
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 259 QRVVGEAYTGNITVSAHLVDEMLYCFLK 342
Q+++ E Y GN+ V V + C +K
Sbjct: 41 QKIIDEVYNGNVNVEDENVQSYVECMMK 68
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 26.2 bits (55), Expect = 0.26
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 256 IVHELKPSPTEISLLECQFLSSNHLL*VQLWI 161
+V ELK P ++ L+C + N +L V W+
Sbjct: 47 LVEELKSKPGKLVPLQCDLSNQNDILKVIEWV 78
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 25.4 bits (53), Expect = 0.45
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 488 SKASRCPANTGATVFQEVTPTYSGAGPAASRGPSLPPNSAADNN 357
SKA A+T ATV T A A GP+ P A +N
Sbjct: 206 SKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSN 249
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.2 bits (50), Expect = 1.0
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 444 EHGGARVRRTPAGLAHRXATLAQQITXRNE 533
EH G V AGLA R L I+ NE
Sbjct: 133 EHNGDTVTDVEAGLASRTNPLDDSISQANE 162
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 24.2 bits (50), Expect = 1.0
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 444 EHGGARVRRTPAGLAHRXATLAQQITXRNE 533
EH G V AGLA R L I+ NE
Sbjct: 128 EHNGDTVTDVEAGLASRTNPLDDSISQANE 157
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 23.0 bits (47), Expect = 2.4
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 497 VPVSKASRCPANTGATV-FQEVTPTYSGAGPAASRGPSLPPNS 372
VPV + P G + QE P + GP+ S +PPN+
Sbjct: 350 VPVYCGNFPPRPMGPWISIQEQIPRFRHIGPSTSFPRFIPPNA 392
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 59 KRPSRMFSTTLLWTTVTKSL 118
KR SR STT LW + K L
Sbjct: 449 KRKSREGSTTYLWEFLLKLL 468
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.8 bits (44), Expect = 5.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 395 GPSLPPNSAADNNLHVSFFR 336
G S ++ +D N+HVSF R
Sbjct: 127 GISSRDSAFSDKNIHVSFLR 146
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.7
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 494 PVSKASRCPANTGATV-FQEVTPTYSGAGPAASRGPSLPPNS 372
PV + P G V QE P + GP S +PPN+
Sbjct: 351 PVYYGNFPPRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNA 392
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.7
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 494 PVSKASRCPANTGATV-FQEVTPTYSGAGPAASRGPSLPPNS 372
PV + P G V QE P + GP S +PPN+
Sbjct: 351 PVYYGNFPPRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNA 392
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.7
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 494 PVSKASRCPANTGATV-FQEVTPTYSGAGPAASRGPSLPPNS 372
PV + P G V QE P + GP S +PPN+
Sbjct: 351 PVYYGNFPPRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNA 392
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.0 bits (42), Expect = 9.7
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 494 PVSKASRCPANTGATV-FQEVTPTYSGAGPAASRGPSLPPNS 372
PV + P G V QE P + GP S +PPN+
Sbjct: 340 PVYYGNFPPRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNA 381
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,955
Number of Sequences: 438
Number of extensions: 3288
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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