Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2034
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   3.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 67  NANTPNRNVIEPILFFFCSQNT 2
           N+ T  RNV+ PI+  F   NT
Sbjct: 177 NSTTGKRNVVTPIVQSFDYNNT 198


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +3

Query: 24  NKMGSMTFLLGVFALVTFVFYAEAAGTCPLPSKVYGCSPKCKEDYECTH 170
           N    + + +    L T+ F+   A    LPSK Y       E+Y  +H
Sbjct: 215 NLENKLNYFIEDIGLNTYYFFLRQAFPFWLPSKEYDLPDYRGEEYLYSH 263


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +3

Query: 24  NKMGSMTFLLGVFALVTFVFYAEAAGTCPLPSKVYGCSPKCKEDYECTH 170
           N    + + +    L T+ F+   A    LPSK Y       E+Y  +H
Sbjct: 215 NLENKLIYFIEDIGLNTYYFFLRQAFPFWLPSKEYDLPDYRGEEYLYSH 263


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/34 (20%), Positives = 14/34 (41%)
 Frame = +3

Query: 78  VFYAEAAGTCPLPSKVYGCSPKCKEDYECTHGKV 179
           + + +  G  P P   Y C  +C    + +  K+
Sbjct: 35  IHFLQYPGCVPKPIPSYACRGRCSSYLQVSGSKI 68


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 399 INYIMKSDLSLFKLCCISFSSLLDHACI 316
           I+Y+   D+ L     + F+SLL++A +
Sbjct: 277 ISYVKSIDVYLGTCFVMVFASLLEYATV 304


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 399 INYIMKSDLSLFKLCCISFSSLLDHACI 316
           I+Y+   D+ L     + F+SLL++A +
Sbjct: 277 ISYVKSIDVYLGTCFVMVFASLLEYATV 304


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 399 INYIMKSDLSLFKLCCISFSSLLDHACI 316
           I+Y+   D+ L     + F+SLL++A +
Sbjct: 216 ISYVKSIDVYLGTCFVMVFASLLEYATV 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,663
Number of Sequences: 438
Number of extensions: 2118
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)