Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2033
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.1  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 156 TDISTKLENSRNTLRKIARNDG 221
           T    KL  S +TLRKIA+N G
Sbjct: 889 TQTLDKLIRSPDTLRKIAQNRG 910


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 294 TVLVPSRLMNLPQEGD 341
           T+ VP++L+ + Q+GD
Sbjct: 134 TITVPNKLLRISQDGD 149


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 144 MSFNTDISTKLENSRNTLRKIARND-GAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLM 320
           M  N +I+  +++++NT+     ND      K++I N  E+  +M  +    +   ++ M
Sbjct: 411 MEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIEN--EQLNRMYKSYPNYIDKETKDM 468

Query: 321 NL 326
           NL
Sbjct: 469 NL 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,325
Number of Sequences: 438
Number of extensions: 3185
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)