Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2032
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   420   e-120
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   415   e-118
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   301   3e-84
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   268   2e-74
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    40   3e-05
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   1.5  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   1.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   4.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.8  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  420 bits (1034), Expect = e-120
 Identities = 198/203 (97%), Positives = 199/203 (98%)
 Frame = +3

Query: 39  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 218
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 219 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 398
           DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 399 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 578
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY E R+EEIKKEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKK 180

Query: 579 IGYNPATVAFVPISGWHGDNMLE 647
           IGYNPA VAFVPISGWHGDNMLE
Sbjct: 181 IGYNPAAVAFVPISGWHGDNMLE 203


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  415 bits (1021), Expect = e-118
 Identities = 195/204 (95%), Positives = 199/204 (97%)
 Frame = +3

Query: 39  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 218
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 219 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 398
           DKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 399 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKK 578
           GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPY EAR+EEIKKEVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKK 180

Query: 579 IGYNPATVAFVPISGWHGDNMLEP 650
           IGYN A+VAFVPISGWHGDNMLEP
Sbjct: 181 IGYNTASVAFVPISGWHGDNMLEP 204


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  301 bits (740), Expect = 3e-84
 Identities = 142/146 (97%), Positives = 143/146 (97%)
 Frame = +3

Query: 210 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 389
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 390 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSY 569
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY E R+EEIKKEVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 570 IKKIGYNPATVAFVPISGWHGDNMLE 647
           IKKIGYNPA VAFVPISGWHGDNMLE
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLE 146


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  268 bits (658), Expect = 2e-74
 Identities = 126/130 (96%), Positives = 127/130 (97%)
 Frame = +3

Query: 258 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 437
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 438 REHALLAFTLGVKQLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPI 617
           REHALLAFTLGVKQLIVGVNKMDSTEPPY E R+EEIKKEVSSYIKKIGYNPA VAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 618 SGWHGDNMLE 647
           SGWHGDNMLE
Sbjct: 121 SGWHGDNMLE 130


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 37/117 (31%), Positives = 52/117 (44%)
 Frame = +3

Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 476
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 477 QLIVGVNKMDSTEPPYHEARYEEIKKEVSSYIKKIGYNPATVAFVPISGWHGDNMLE 647
            +IV +NK+D       + +YE  K  +   I+++G     +  V IS   G N+ E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELG---GEIQCVKISALKGINLRE 298



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 51  KTHINIVVIGHVDSGKST 104
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 60  INIVVIGHVDSGKST 104
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 629 VPARYRYERHSSGIVTNFLNV 567
           +PA  R++ H +G++T   NV
Sbjct: 76  LPANKRFQAHCAGVITALNNV 96


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 629 VPARYRYERHSSGIVTNFLNV 567
           +PA  R++ H +G++T   NV
Sbjct: 76  LPANKRFQAHCAGVITALNNV 96


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 282 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 383
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 282 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 383
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 522 YHEARYEEIKKEVSSYIKKIGYNPATVAFVPI 617
           Y+ + Y       ++Y KK+ YN   +  +P+
Sbjct: 89  YNYSNYNNYNNNYNNYNKKLYYNINYIEQIPV 120


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = -1

Query: 506 VHFIHADNKLFYAKSESKQGVFASLSILTDTGFELASSGCHDQYCAISLGSTRDHVLNEI 327
           VH I   NKL     +        L+I      EL +     Q C + LGS +   +  I
Sbjct: 132 VHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSCKCIYVQSI 191

Query: 326 SM 321
           ++
Sbjct: 192 NL 193


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 190 LPIS*ASFSNFSIVRLSMPPHL*MRWPVVVDFPESTWPMTTML 62
           L +S     N S++ L  PP +  R  +       T+P  TML
Sbjct: 451 LAVSAEREKNVSLLHLIFPPDIAKRLWLGETIEAKTYPEVTML 493



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -2

Query: 526 W*GGSVESILFTPTISCFTPRVKASRACSRVCPFLLI 416
           W G ++E+  +      F+  V  +  CS   P ++I
Sbjct: 477 WLGETIEAKTYPEVTMLFSDIVGFTEICSTATPMMVI 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,196
Number of Sequences: 438
Number of extensions: 4239
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)