Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2023
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.52 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   8.5  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
 Frame = -2

Query: 570 LTRKDHRDRGGARAASPTYSTTID*D*RACAVRR-------LYPDTHRYSTST*TLVRAQ 412
           LT + HR RG     S   S         C+V+R        YP T   +T   TL R  
Sbjct: 303 LTLRIHRGRGSVHNGSNNGSPRSPESNSRCSVKREKIKISVSYPSTETLNTKCNTLERTP 362

Query: 411 YA*LGTRSHYKNSDS 367
                T  HY N  +
Sbjct: 363 SKCSQTSVHYSNGQT 377


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 206 HDLHDEVLSRRQRLVTVRLAPL 141
           H +H E LSR QR +  RL  L
Sbjct: 107 HAVHKEQLSREQRFLRRRLEQL 128


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 92  WKIRSVAGRRPVP 130
           WK R V G +PVP
Sbjct: 29  WKSRGVVGPKPVP 41


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 429 FTCSSSIDACPDTSAALRRRVNPSQLSLSKLEKRRALPRG 548
           F C+ S+D  P  +     R  P  + L  +  R + PRG
Sbjct: 682 FNCNCSMDWLPGINNQTSTREYPRIMDLDNVMCRTSGPRG 721


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 423 PMFTCSSSIDACPDTSAALRRRVNPSQLSLSKLEKRRAL 539
           P+FT  SS  A   T   +R+R   S    +K+ K  AL
Sbjct: 77  PVFTIVSSYAAIVLTLKKVRKRAGASGRREAKITKMVAL 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,903
Number of Sequences: 438
Number of extensions: 3309
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)