Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2022
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   1.8  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   2.4  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   4.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   7.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   7.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 257 VWPVHGTQLPGNMEWSSLF 201
           V+P    +LPG+  WS LF
Sbjct: 362 VYPSAVLELPGSSIWSCLF 380


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 257 VWPVHGTQLPGNMEWSSLF 201
           V+P    +LPG+  WS LF
Sbjct: 415 VYPSAVLELPGSSIWSCLF 433


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +1

Query: 37  SFKLEIQ-MACGTECLSLG 90
           SFK ++   AC   CLSLG
Sbjct: 50  SFKGQVNDSACAANCLSLG 68


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +1

Query: 37  SFKLEIQ-MACGTECLSLG 90
           SFK ++   AC   CLSLG
Sbjct: 50  SFKGQVNDSACAANCLSLG 68


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 71  VPHAICISNLNDFFYTKWM 15
           +P  I    L+ FF+ KW+
Sbjct: 637 IPSHIMAGLLDKFFFPKWL 655


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 9   KVHPFCVKKIV*IRNTNGVRYRVPVSGSTTRFH 107
           KV P  V++    R    +RY  P    T R H
Sbjct: 586 KVRPSTVEEREEFRRQERMRYAAPHKAFTYRMH 618


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = -3

Query: 120 WHVQYGIWWW 91
           W V  G+W W
Sbjct: 407 WSVNAGMWMW 416


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 141 LSQCCQPHPTVQSIQMS 191
           L+QC Q   T QS++ S
Sbjct: 21  LTQCLQESSTGQSVEFS 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,426
Number of Sequences: 438
Number of extensions: 2484
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)