Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2015
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   167   9e-43
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   164   8e-42
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    27   2.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   3.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  167 bits (407), Expect = 9e-43
 Identities = 84/171 (49%), Positives = 112/171 (65%)
 Frame = +2

Query: 47  GLTXHVKXXLATXKGPXGVLKXNFKHLAVDIRXVNPXLLXVDXWFGSKKELAAXXTVCSH 226
           G++  +K  L T KGP GVLK N + + ++++     +  +  W GS+K  A   T  S 
Sbjct: 16  GVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGNTIKFI-VWHGSRKHNACIRTAYSI 74

Query: 227 VENMIKGVTKGXQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGDKYIRRVKMAPGVTVVN 406
           + NMI GVT+G +YKMR VYAHFPIN   TE  +++EIRNFLG++  R +K  PGVTV  
Sbjct: 75  INNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSI 134

Query: 407 SPKQKDELIIEXNSLEDVSSSAALIQQSTTVKXXDIXKFLDGLYVSEKTTV 559
           S   KDE+IIE NSLE+VS SAA I+Q   V+  DI KFLDG+YVSE+  +
Sbjct: 135 SSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  164 bits (399), Expect = 8e-42
 Identities = 82/171 (47%), Positives = 111/171 (64%)
 Frame = +2

Query: 47  GLTXHVKXXLATXKGPXGVLKXNFKHLAVDIRXVNPXLLXVDXWFGSKKELAAXXTVCSH 226
           G+T  +K    T  GP G LK N +H+ ++++     +  +  W GS+K  A   +V S 
Sbjct: 16  GVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGNTIKFI-VWHGSRKHNACIRSVYSI 74

Query: 227 VENMIKGVTKGXQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGDKYIRRVKMAPGVTVVN 406
           + NMI GVT+G +YKMR VYAHFPIN   TE  +++EIRNFLG++  R +K  PGVTV  
Sbjct: 75  INNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSI 134

Query: 407 SPKQKDELIIEXNSLEDVSSSAALIQQSTTVKXXDIXKFLDGLYVSEKTTV 559
           S   KDE+I+E NSLE+VS SAA I+Q   V+  DI KFLDG+YVSE+  +
Sbjct: 135 SSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -2

Query: 409 RVNDSHTRCHLYPSDVFIPQEVT 341
           ++N++++ CH YP  + +P  ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 327 QLLRYVTSWGINTSEG*RWHLV*LSLTLPNKRM 425
           Q   +VT   + TS+   W+LV L L LPN ++
Sbjct: 724 QTFAFVTFNKVCTSQYFMWYLVFLPLVLPNSKL 756


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 201 ASSFLDPNHXSTFRXXGFTXRMSTAKC-LKFXLRTPXG 91
           A SFL+P   STF    F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,230
Number of Sequences: 5004
Number of extensions: 31998
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)