Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2014
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    48   2e-06
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.0  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    26   6.0  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    26   6.0  

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/70 (30%), Positives = 40/70 (57%)
 Frame = +3

Query: 357 QELDVRMLIHQSRAGCVIGKAGSKIKELREKTGARLKIFSNSAPXSSERIVXLIGKPDSI 536
           Q+L +R L+    AG +IGKAG  + ELR  T  +  + + + P   +R++ + G  +++
Sbjct: 92  QQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGV-TKAVPNVHDRVLTISGPLENV 150

Query: 537 VSGVRXVLDL 566
           V   R ++D+
Sbjct: 151 VRAYRFIIDI 160



 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 399 GCVIGKAGSKIKELREKTGARLKIFSNSAPXSSERIVXLIG 521
           GC+IG+ GSKI E+R  +G+++ I       + ER+  + G
Sbjct: 333 GCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITG 373


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 269 FSCYGEYPFGAGAIWDCYRGF 207
           F CY E P G  AI  C + F
Sbjct: 293 FLCYSEKPNGINAIMKCMKNF 313


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 405 VIGKAGSKIKELREKTGARLKI 470
           VIGK GS +  LRE  G ++ +
Sbjct: 744 VIGKNGSNVSSLREDLGVQINV 765


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = -3

Query: 260 YGEYPFGAGAIWDCYRGFVLAXEL*YIAATFSDYRPSHLXRYQEGDFIVCLPVP 99
           YG  P G GA W C      A E     A F   R  H+ R+    F  CLP P
Sbjct: 55  YGSTPAG-GAEW-CSE----ALERSRPRAAFKQQRRRHVPRWISDSFRTCLPKP 102


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 133 RKVTSSSVCRCRXWAGPSSPYASRFILMPNKVQSSYGYPG 14
           + V S +    + W+ PS+P A ++ +      +SY Y G
Sbjct: 38  KAVPSETAAEVKEWSMPSAPTAPKYDVDFTSALNSYKYEG 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,181
Number of Sequences: 5004
Number of extensions: 47038
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)