Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2013
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 170 1e-43
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 170 1e-43
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 34 0.015
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 3.0
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 4.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.0
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.0
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 9.3
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 170 bits (413), Expect = 1e-43
Identities = 79/107 (73%), Positives = 91/107 (85%)
Frame = +2
Query: 104 AMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPDWFLNRQK 283
AMT IKGVGRRY+NIV KKADID+ KRAGE T EE+E+I+TI+ NP Q+KIP WFLNRQK
Sbjct: 29 AMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQK 88
Query: 284 DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 424
DI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH LRVRGQH
Sbjct: 89 DINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = +1
Query: 19 MSLVIPDKFQHILRIMNTNIDGKRKVMF 102
MSLV+PD FQHILR++NTN+DGK KVMF
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMF 28
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 170 bits (413), Expect = 1e-43
Identities = 79/107 (73%), Positives = 91/107 (85%)
Frame = +2
Query: 104 AMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPDWFLNRQK 283
AMT IKGVGRRY+NIV KKADID+ KRAGE T EE+E+I+TI+ NP Q+KIP WFLNRQK
Sbjct: 29 AMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQK 88
Query: 284 DIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 424
DI DGK QL ++N+DSKLREDLERLKKI+ HRG+RH LRVRGQH
Sbjct: 89 DINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135
Score = 53.6 bits (123), Expect = 2e-08
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = +1
Query: 19 MSLVIPDKFQHILRIMNTNIDGKRKVMF 102
MSLV+PD FQHILR++NTN+DGK KVMF
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMF 28
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 33.9 bits (74), Expect = 0.015
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 347 DLERLKKIRAHRGMRHYWGLRVRGQH 424
D+ RL IR +RGMRH GL V GQ+
Sbjct: 76 DISRLVNIRCYRGMRHVNGLPVNGQN 101
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 232 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPANT 122
+++D F+ F C F+ + G + NN G+ P ++
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDS 372
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 350 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 249
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 7.0
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 152 LKKADIDLDKRAGECTEEEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 331
L+K D L+ R+ ++ +E+ + ++ IP+ ++ +D + +L ++ D
Sbjct: 974 LRKLDGVLEARSKRLSQ--LEERVKLLGAGSTSSIPNSPRASKRVSLDSEDKKLVPASPD 1031
Query: 332 -SKLREDLERLKKIRAHRGMRHYWGLRVR 415
S ++ + LK R GM H W LR+R
Sbjct: 1032 KSAVQRGITALK--RDAEGMSHIWQLRLR 1058
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 249 YCXGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 130
YC F + + + V+SP ++ M+ F+R +L YL+
Sbjct: 58 YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 9.3
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +1
Query: 316 LLQLGFKTP*RFGEAQEDSRSQRDATLLGPSCAWSAH*DYWQERKNCW 459
L L FK+ + D +R AT + S W A+ YWQ W
Sbjct: 43 LRHLPFKSSINEETREWDLSGRRGATTMYSSMNWLANSTYWQTTLVGW 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,721
Number of Sequences: 5004
Number of extensions: 39358
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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