Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2011
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022272-1|CAA18354.1|   77|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   6.6  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL022272-1|CAA18354.1|   77|Caenorhabditis elegans Hypothetical
           protein H12C20.2b protein.
          Length = 77

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 41  RRYREWLYISVLVPXILLSYLDNCGNSRANTCNQNSDQ*WDECFY 175
           RR    L+ SVL P +L  Y ++ G  +   CN   ++ ++ C++
Sbjct: 24  RRQCSLLFSSVLTPELLKLYFNSTGCCQLVKCNSAVNRQFNRCWF 68


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 410 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 306
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 427 GNLRACCLPWMW*PFLRLPLR 365
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 87  SYSVTWITVVILELIHAIRTLTSDGMS 167
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,030,932
Number of Sequences: 27780
Number of extensions: 321694
Number of successful extensions: 969
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)