Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2010
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.49 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.4  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   4.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.0  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 220 DGLXXXXXXXXXXHRGHMVHCDSAEGHPEDPV 125
           DG+            GHM H  +  GHP  P+
Sbjct: 105 DGMGGYRSASPSPGMGHMGHTPTPNGHPSTPI 136


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 135 RIPSNLAATKASPGSDTASANVWRRTLSPPTVTSS 31
           R  S   + KA PGS  A +   ++ LSP  + SS
Sbjct: 886 RPASQATSVKAEPGSIMAMSESSKKVLSPGELLSS 920


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 628 RCACPASWRWTCP 666
           R  CPA W W  P
Sbjct: 380 RNGCPADWLWIVP 392


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 517 LQPHTAPAASHLYHRRETTSRSKATNYXL 603
           L PH  PA+++ Y  ++     KA+++ L
Sbjct: 4   LIPHRNPASANYYENKDGARIVKASHFEL 32


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 186 SNTGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVE 25
           S+ G   + A  L +  R  S  +   AS  S TAS+    R+   P+V+ S E
Sbjct: 154 SSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSESDE 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,840
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)