Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2004
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    72   9e-14
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.4  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   7.8  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.8  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
 Frame = +1

Query: 61  MAPPYYADLGKKANDVFIXGYHFGXFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 237
           MAPP YA + K  ND+    +  G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 238 KXAXKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKL 399
               K  GLT ++ W T N L + + + ++ A GL + +  TF+P T  KT  L
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAIL 112


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 597 RAKSPDWYLRAKLFLENFAFCVSN 526
           ++KS DWYL+  LF   ++F  S+
Sbjct: 34  QSKSEDWYLKNGLFFRYYSFLKSS 57


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 196  SNQESGKVFGSLSSKXAXKDYGLTFTEKWNTDNT 297
            SNQ   K+  +L+ +   K +   +  K   DNT
Sbjct: 1160 SNQSKDKIIAALAKRNVYKSFAGLYDSKGKNDNT 1193


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 430 ENTNLDLDLAGPVVDVGSSTKLPGL 504
           ENTN+D D+   + + G+ T +P L
Sbjct: 266 ENTNIDEDITQMIQNEGTGTTIPPL 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,138
Number of Sequences: 5004
Number of extensions: 53671
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)