Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2004
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 56 3e-08
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 35 0.070
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 29 3.5
05_03_0373 - 13194723-13195847,13196219-13196809 29 3.5
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 29 4.6
10_08_0881 - 21268996-21269103,21269389-21269496,21269827-212699... 29 4.6
01_01_0212 - 1814769-1814813,1814856-1814923,1816119-1816203,181... 29 4.6
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 6.0
02_02_0090 + 6676296-6676802,6678550-6678855 28 6.0
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 28 8.0
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 56.0 bits (129), Expect = 3e-08
Identities = 43/139 (30%), Positives = 69/139 (49%)
Frame = +1
Query: 61 MAPPYYADLGKKANDVFIXGYHFGXFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 240
MAP Y D+GKK D+ Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYG-THHKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 241 XAXKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 420
K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112
Query: 421 TVAENTNLDLDLAGPVVDV 477
N ++ L+ + P+V++
Sbjct: 113 YAGINASVGLN-SNPMVNL 130
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = -1
Query: 548 TLLFVYQTGCVHQPANPGSLVLLPTS 471
TLLFVYQTG P PG L+LLP S
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLLPIS 718
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 136 FKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKXAXKDYGLTFTEKWNTDNT 297
F LDL S + G++F SG+ S + V L+ + A KDY T+ N D T
Sbjct: 277 FHLDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFREAIKDYSTPSTKTLNRDLT 332
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 358 GTFAPQTGTKTGKLKTSFTNDTVAENTNLDLDL 456
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = -1
Query: 530 QTGCVHQPANPGSLVLLPTSTTGPAKSRSKLVFSATVSLVNEVFNFPVLVPVCGAKVPSR 351
Q QP + +LLP++ T P R + + S T + + P PV S
Sbjct: 24 QRSAAAQPLGDVTNLLLPSTPTNPTTGRPRPLPSDTTAAASTCSASPSHTPVSKPSSASG 83
Query: 350 VTLRPAAILSWIVMSVANVLSV 285
T P I + V+++ +L++
Sbjct: 84 ETTAPNPISARFVVAIGILLTL 105
>10_08_0881 -
21268996-21269103,21269389-21269496,21269827-21269916,
21270010-21270246,21270335-21270901
Length = 369
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 322 DKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAENTNLDLDLAGPVVDVGSSTKLPG 501
++++ +K +EG Q K ++ TS V+ NL A VD+G+S
Sbjct: 307 EELSTTIKQEVEGL---QEAMKLARIVTSLQVQEVSLRANLIQIQAKQKVDMGASVPAIA 363
Query: 502 LAGWC 516
+GWC
Sbjct: 364 TSGWC 368
>01_01_0212 -
1814769-1814813,1814856-1814923,1816119-1816203,
1816306-1816554
Length = 148
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -1
Query: 506 ANPGSLVLLPTSTTGPAKSRSK-LVFSATVSLVNEVFNFPVLVPVCGAKVPSRVTLRPAA 330
A P S L P +T+ P R + L+ SA L + V A VP RPA
Sbjct: 6 ATPASARLSPLTTSSPEPCRRRRLLLSAAAPLRRTRLRRRIAVV---ASVPDPAA-RPAE 61
Query: 329 ILSWIVMSVANVLSVFH 279
W++ + N S +H
Sbjct: 62 YTPWLIAGLGNPGSKYH 78
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 431 SATVSLVNEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 282
S +S ++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 599 SDCLSSGDQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>02_02_0090 + 6676296-6676802,6678550-6678855
Length = 270
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 602 CGEQSHQIGTLEQSCSWRTLLFVYQTGCVHQPANPGSLVLLPTSTTGPA 456
C + + Q G L +++ L Q+GC PA G + PT GPA
Sbjct: 145 CKKLARQAGFLTADQFYQSRLSPLQSGCCKPPAVCGYNYVSPTVWAGPA 193
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 191 IPLVNSTPDSLLVFRSSLKXPK**PLMKTSLAFFPRSA 78
+P + PDSLLV +SL + PL+++ L+ P SA
Sbjct: 115 LPGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPPSA 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,388,025
Number of Sequences: 37544
Number of extensions: 363709
Number of successful extensions: 852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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