Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2003
         (580 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1973|AAF48330.3|  777|Drosophila melanogaster CG32626-P...    73   4e-13
BT011059-1|AAR31130.1|  665|Drosophila melanogaster RE05438p pro...    70   3e-12
AE014298-1972|AAF48329.3|  774|Drosophila melanogaster CG32626-P...    70   3e-12
AY089249-1|AAL89987.1|  322|Drosophila melanogaster AT03573p pro...    28   7.9  
AE013599-925|AAF58900.1|  322|Drosophila melanogaster CG1652-PA ...    28   7.9  

>AE014298-1973|AAF48330.3|  777|Drosophila melanogaster CG32626-PD,
           isoform D protein.
          Length = 777

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 55/139 (39%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
 Frame = +3

Query: 147 D*KLFGEIMSIRGVQDGSRS--PLIITDSFFDDGGSESPTSAVGAEAPRELPNELSAPYE 320
           D +L+G  M  +    G+ S  P I +D   D   ++SP     AEA  E+ NE+SAPYE
Sbjct: 15  DVRLYGGSMGNQLNDKGTASSTPTISSDDLSDL--ADSPVDEK-AEADVEVTNEISAPYE 71

Query: 321 VPQFPIEQIEKKLLIQRQLNVKAAECAQSVRXXXXXXXXXXXXXXXXXRLKVPDDDDDEI 500
           VPQFPIEQIEKKL IQR LN K A   + V                  R      + ++ 
Sbjct: 72  VPQFPIEQIEKKLQIQRHLNEKQATGPRPVATAAVLATNRESSSSTEGRESAVTMERNDA 131

Query: 501 ILPHFQRVAXSGXDTFRVP 557
            + +FQRV+ SG DT  VP
Sbjct: 132 DI-NFQRVSISGEDTSGVP 149


>BT011059-1|AAR31130.1|  665|Drosophila melanogaster RE05438p
           protein.
          Length = 665

 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 43/95 (45%), Positives = 52/95 (54%)
 Frame = +3

Query: 273 AEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECAQSVRXXXXXXXXXXXXX 452
           AEA  E+ NE+SAPYEVPQFPIEQIEKKL IQR LN K A   + V              
Sbjct: 53  AEADVEVTNEISAPYEVPQFPIEQIEKKLQIQRHLNEKQATGPRPVATAAVLATNRESSS 112

Query: 453 XXXXRLKVPDDDDDEIILPHFQRVAXSGXDTFRVP 557
               R      + ++  + +FQRV+ SG DT  VP
Sbjct: 113 STEGRESAVTMERNDADI-NFQRVSISGEDTSGVP 146


>AE014298-1972|AAF48329.3|  774|Drosophila melanogaster CG32626-PA,
           isoform A protein.
          Length = 774

 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 43/95 (45%), Positives = 52/95 (54%)
 Frame = +3

Query: 273 AEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECAQSVRXXXXXXXXXXXXX 452
           AEA  E+ NE+SAPYEVPQFPIEQIEKKL IQR LN K A   + V              
Sbjct: 53  AEADVEVTNEISAPYEVPQFPIEQIEKKLQIQRHLNEKQATGPRPVATAAVLATNRESSS 112

Query: 453 XXXXRLKVPDDDDDEIILPHFQRVAXSGXDTFRVP 557
               R      + ++  + +FQRV+ SG DT  VP
Sbjct: 113 STEGRESAVTMERNDADI-NFQRVSISGEDTSGVP 146


>AY089249-1|AAL89987.1|  322|Drosophila melanogaster AT03573p
           protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 237 DGGSESPTSAVGAEAPRELPNELSAP 314
           DG + +PT A GAEAP     E  AP
Sbjct: 294 DGATPAPTPAPGAEAPAAAAAETPAP 319


>AE013599-925|AAF58900.1|  322|Drosophila melanogaster CG1652-PA
           protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 237 DGGSESPTSAVGAEAPRELPNELSAP 314
           DG + +PT A GAEAP     E  AP
Sbjct: 294 DGATPAPTPAPGAEAPAAAAAETPAP 319


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,416,328
Number of Sequences: 53049
Number of extensions: 389200
Number of successful extensions: 1152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)