Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2003
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U47144-1|AAB52616.2| 448|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z30662-11|CAE17937.1| 358|Caenorhabditis elegans Hypothetical p... 28 5.5
Z30317-8|CAE17925.1| 358|Caenorhabditis elegans Hypothetical pr... 28 5.5
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 28 5.5
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 27 9.6
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 27 9.6
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 27 9.6
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 27 9.6
>U47144-1|AAB52616.2| 448|Caenorhabditis elegans Hypothetical
protein ZC53.1 protein.
Length = 448
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 201 RSPLIITDSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQ 329
R+ +++TD DDG S+ P + + R+ P E S YE P+
Sbjct: 251 RAEILVTD---DDGTSQQPRGSARGDNKRKSPQEPSMSYEGPK 290
>Z81555-6|CAJ85762.1| 709|Caenorhabditis elegans Hypothetical
protein F58E10.1b protein.
Length = 709
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 156 LFGEIMSIRGVQDGSRSPLIITDSFFDDGGSE 251
+F ++MS+R + +GS PL+ + +D+ S+
Sbjct: 266 VFNDVMSVRSLAEGSDDPLLDDEFRYDEEDSD 297
>Z81555-5|CAB04517.2| 694|Caenorhabditis elegans Hypothetical
protein F58E10.1a protein.
Length = 694
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 156 LFGEIMSIRGVQDGSRSPLIITDSFFDDGGSE 251
+F ++MS+R + +GS PL+ + +D+ S+
Sbjct: 251 VFNDVMSVRSLAEGSDDPLLDDEFRYDEEDSD 282
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 216 ITDSFFDDGGSESPTSAVGAEAPRELPNEL 305
+T FD+GG + +E+PR +PN +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSI 32
>Z30662-11|CAE17937.1| 358|Caenorhabditis elegans Hypothetical
protein T16G12.9 protein.
Length = 358
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 222 DSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECA 401
+ F + +ES +S+V EA + + E FP+++ ++ IQR +N AEC
Sbjct: 283 EEFKHELNNESSSSSVAEEAMEVAVDYKNEDDE--DFPMDE-DETTQIQRIINYSRAECG 339
Query: 402 QSVR 413
+++R
Sbjct: 340 ENIR 343
>Z30317-8|CAE17925.1| 358|Caenorhabditis elegans Hypothetical
protein T16G12.9 protein.
Length = 358
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 222 DSFFDDGGSESPTSAVGAEAPRELPNELSAPYEVPQFPIEQIEKKLLIQRQLNVKAAECA 401
+ F + +ES +S+V EA + + E FP+++ ++ IQR +N AEC
Sbjct: 283 EEFKHELNNESSSSSVAEEAMEVAVDYKNEDDE--DFPMDE-DETTQIQRIINYSRAECG 339
Query: 402 QSVR 413
+++R
Sbjct: 340 ENIR 343
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 216 ITDSFFDDGGSESPTSAVGAEAPRELPNEL 305
+T FD+GG + +E+PR +PN +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSI 32
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 275 RPHGARRAFTAAIIEERIGDD 213
RP +++AF +AI E IGDD
Sbjct: 476 RPEKSKKAFLSAIDSEEIGDD 496
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 275 RPHGARRAFTAAIIEERIGDD 213
RP +++AF +AI E IGDD
Sbjct: 673 RPEKSKKAFLSAIDSEEIGDD 693
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 111 LTTTNVNGAVKGD*KLFGEIMSIRGVQDGSRSPLIITDSFFDDGGSESPTSAVGAEA 281
LTT N VK G I RG+ +G P+ + ++ F+D GA A
Sbjct: 649 LTTDLHNKTVKNKMTKQGYINMNRGINEGGNIPVELLEAIFEDISKNEIKMRAGATA 705
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 111 LTTTNVNGAVKGD*KLFGEIMSIRGVQDGSRSPLIITDSFFDDGGSESPTSAVGAEA 281
LTT N VK G I RG+ +G P+ + ++ F+D GA A
Sbjct: 649 LTTDLHNKTVKNKMTKQGYINMNRGINEGGNIPVELLEAIFEDISKNEIKMRAGATA 705
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,841,248
Number of Sequences: 27780
Number of extensions: 192397
Number of successful extensions: 487
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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