Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2001
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.002
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.076
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 32 0.10
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.13
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.18
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.31
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.31
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.40
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.54
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.54
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 0.54
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.71
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.94
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.94
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.94
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.2
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.6
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 2.2
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 27 3.8
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 3.8
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 3.8
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 5.0
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 5.0
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 5.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 5.0
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 6.6
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 6.6
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 6.6
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 6.6
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 6.6
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.7
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 8.7
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 8.7
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 25 8.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 8.7
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 8.7
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 8.7
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 8.7
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 8.7
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 8.7
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +1
Query: 94 ATMADAAVDKKEVAPEEVTSTEPKESPV---KKSPAKKVEAAESNGKENGTDEAPEDSPA 264
++ D + K + + +S EP + V KKS K+ ++ES + + ++ S +
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
Query: 265 ENGDAEESNDASENGDATEKKETGVK 342
E+ +E + +SE+ + ++E VK
Sbjct: 104 ESSSSESESSSSESSSSESEEEVIVK 129
Score = 33.1 bits (72), Expect = 0.043
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 118 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND- 294
+KKE + + + + ES + S ++ E E K T+E E S + D+E S+D
Sbjct: 158 EKKESSSDSSSESSSSESESESSSSESEEEEEVVEK---TEEKKEGSSESSSDSESSSDS 214
Query: 295 ASENGDATEKKET 333
+SE+GD+ ++
Sbjct: 215 SSESGDSDSSSDS 227
Score = 29.9 bits (64), Expect = 0.40
Identities = 18/83 (21%), Positives = 41/83 (49%)
Frame = +1
Query: 103 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE 282
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ +
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 283 ESNDASENGDATEKKETGVKRKS 351
E +E A+E++ + + S
Sbjct: 236 EKKRKAE--PASEERPAKITKPS 256
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.3 bits (70), Expect = 0.076
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 121 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP-AENGDAEE 285
K+E P E + +P SPV S K E +E K +DEAP+ +P AE+ EE
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAPLAESKKVEE 539
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 136 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 288
PE ++PKES ++ P+K+ E + + +E + +N EE+
Sbjct: 430 PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEET 480
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.9 bits (69), Expect = 0.10
Identities = 14/60 (23%), Positives = 35/60 (58%)
Frame = +1
Query: 139 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 318
E +S+E +S S ++ +++ + + + ++ +DS +++ D+ ES +SE+ D+T
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS-ESESSSEDSDST 302
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 148 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 327
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 192
Query: 328 ET 333
+
Sbjct: 193 SS 194
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 148 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 327
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 246
Query: 328 ET 333
+
Sbjct: 247 SS 248
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 169 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 315
+P+K+ PAK ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 124 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN-GDAEESNDAS 300
++V ++TS EPK + KSP +K + ++ T++ DS +N ++S DA
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDAV 1031
Query: 301 ENGDAT 318
+ AT
Sbjct: 1032 DTSTAT 1037
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 30.3 bits (65), Expect = 0.31
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 202 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 312
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 163 KESPVKKSPAK-KVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGV 339
K PV++ P K + ++ NG+E T + E++ + G ++E N+A+ + + GV
Sbjct: 123 KARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDE-NEANTATAPSSNEANGV 181
Query: 340 KRK 348
+K
Sbjct: 182 DKK 184
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.9 bits (64), Expect = 0.40
Identities = 22/76 (28%), Positives = 28/76 (36%)
Frame = +1
Query: 127 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 306
E +P S + + K K + E KE EA EE A N
Sbjct: 374 ESSPATSISVDEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPEVAENN 433
Query: 307 GDATEKKETGVKRKSV 354
TEKKET +K +V
Sbjct: 434 EVVTEKKETDIKSDAV 449
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +1
Query: 145 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 324
V ++E ES + S ++ E ES +DE+ +S +E+ ++EE +++ E D +E+
Sbjct: 75 VAASEDSESDSESS--EEEEETESEEDSEVSDESESESESES-ESEEESESEEESDESER 131
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 29.5 bits (63), Expect = 0.54
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +1
Query: 145 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 312
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E D E+ +
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNN 224
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.54
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +1
Query: 139 EEVTSTEPKESPVKKSPAKKVEA--AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 312
+E + KES K++PA+K + A NG E G A + D EE N D
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKE-DGEEGGKRKRNQD 111
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.71
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 127 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 285
++ PE+ + + PVKK P+KK + A++N E DE + E D+E+
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.7 bits (61), Expect = 0.94
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 181 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKR 345
K P+ K + S+ +NG+D DS + N SN +EN +A ++K + R
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRKLEDLNR 1013
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 0.94
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 142 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 309
EV++ EP+ PVK+ V ++ G+ + TD +P E + S + E G
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 0.94
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 151 STEPKESPVKKSPAKKVE-----AAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 315
S P++SPV+ V+ +ESN K +GT+ + +P NG+ EE N+ G
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGN-EEVNNLEPVGQN 232
Query: 316 TEKKE 330
K+E
Sbjct: 233 ESKQE 237
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 208 AESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 360
+ES ++ DE E+ EN D + D +EN + + E G S A+
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAV 289
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 223 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 360
+EN +D E+S + AE A E TE++E K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 348 FPLHTSLFLFCGITVLRCIVAFFGITIFS 262
FP+ +F FC + IV+ G+TIF+
Sbjct: 398 FPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +1
Query: 157 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 336
E +S + S + +A S+ +E ++E ED+ E+G +E + E+G+ ++ E
Sbjct: 939 EGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERK 998
Query: 337 VKRKSVALD 363
+++ D
Sbjct: 999 ARQEDAKHD 1007
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 630 CIYYYINLNLNQTQKSSTFHSMRLSVWV*YICRSGICGC 514
C ++ L+LN+ + +R + ++ SGICGC
Sbjct: 104 CDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 199 VEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 330
VE + NG + + ++ +DS ++ + ESND S + DA + +
Sbjct: 372 VEEIKKNGIQEDS-QSTDDSSKDDDNNSESNDMSPHNDAETRAD 414
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 587 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 480
RA P ++ G N + + Y D MGIDAL+
Sbjct: 36 RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +1
Query: 145 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASE---NGDA 315
+ ++ K SPV + A +N + + +SP + EE+N A + A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASA 586
Query: 316 TEKKETGVKR 345
T +K+ + R
Sbjct: 587 TMEKQYDLHR 596
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 130 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 291
VAP +TS + V KS VE+ +++ T PED P+ ++N
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQAN 340
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 333 SLFLFCGITVLRCIVAFF-GITIFSRRIFWGFIGTILFA 220
++F + C+ FF G TI+ +F G +GT L A
Sbjct: 356 AVFFIFSLFFFLCMRNFFPGFTIYFPALFLGVVGTFLIA 394
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +1
Query: 109 AAVDKKEVAPEEVTSTEPKESPV----KKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 276
A VD++E+ EE + PV K S +K S K + EDS GD
Sbjct: 75 AQVDEEELEEEEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGD 134
Query: 277 AEESN 291
E+ +
Sbjct: 135 EEDGS 139
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 241 EAPEDSPAENGDAEESNDASENGDATEK 324
E PEDS E+G +E + D SE+G+ E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +1
Query: 163 KESPVKKSPAKKVEAAESNGKENG-------TDEAPEDSPAENGDAEESNDA-SENGDAT 318
K +PV A VE AE NG E+ + E ED A+ + +A E +
Sbjct: 403 KPAPVVAPAAPTVE-AEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKK 461
Query: 319 EKKETGVKRK 348
EKKE K+K
Sbjct: 462 EKKEKKEKKK 471
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 160 PKES-PVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG-DAEESNDASENGDAT-EKKE 330
PK S P +PA V A +S NG E+ ENG D SND+ +G E+ E
Sbjct: 396 PKSSFPTSSTPAS-VGAEKSEETSNGNKSEQEEK--ENGNDETRSNDSLVSGKGKGEENE 452
Query: 331 TGV 339
V
Sbjct: 453 DSV 455
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/86 (23%), Positives = 35/86 (40%)
Frame = +1
Query: 97 TMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 276
T A+ ++D S++P E+P S K + E++ K+ +E + AE
Sbjct: 333 TEAEQSIDVSSDIGLRSDSSKPNEAPT-SSENIKADQPENSTKQENPEEDMQIKDAEEHS 391
Query: 277 AEESNDASENGDATEKKETGVKRKSV 354
ES A++ E K S+
Sbjct: 392 NLESTPAAQQTSEVEANNHQEKPSSL 417
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 112 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 255
++D+ +P ++S K SP K+ +K ++A + TDE P D
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSD 633
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +1
Query: 133 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 312
A EE + SP + S K + E + ENG + +N D E DA NG
Sbjct: 144 ADEEGSEISVPSSPKRMSFNLKEDMEEGDFDENG------NFIRKNYDPESQYDAWLNGS 197
Query: 313 ATEKKETGVKRKS 351
+ KK R++
Sbjct: 198 VSNKKSIAAAREA 210
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 163 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 291
+E +S + EA E NG + S EN D+EE N
Sbjct: 3939 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEEN 3981
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 256 SPAENGDAEESNDASENGDAT 318
SP NGD E +ENG+ T
Sbjct: 9 SPTTNGDKNEDGYPAENGEGT 29
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +1
Query: 136 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE---NGDAEESND-ASE 303
P E +TE + + +S + ++ S + D DSP + N + +D SE
Sbjct: 351 PSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESE 410
Query: 304 NG 309
NG
Sbjct: 411 NG 412
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +1
Query: 121 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDAS 300
+KEV + T E ++S + A+K EA+ + +E + +++ ++ EES+ S
Sbjct: 522 QKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLIDEESDALS 581
Query: 301 ENGDATEKKETGVKRKSVA 357
E + + + KRK+ A
Sbjct: 582 ELEEDYRQLKKSKKRKNQA 600
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -3
Query: 313 HHRSQMHRCFLR--HHHFQQANLLGL--HRYHSL-CHY 215
HH SQ ++C LR HH N +G H++ L C Y
Sbjct: 111 HHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFY 148
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 163 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND 294
KE ++ AKK+ ES K+ A + + + A+E ND
Sbjct: 41 KEKAKARAEAKKLAKKESKAKQESKVAAYDTGNSSDNIADEEND 84
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 250 EDSPAENGDAEESNDASENGDATEKKETGVKRKS 351
E+ E+ E NDA+E G + +K+ K+KS
Sbjct: 22 ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKS 55
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 175 VKKSPAKKVEAAESNGKE--NGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 336
++K+ AKK E G DE P + + G+A + N+ E + KK+ G
Sbjct: 103 LEKAYAKKYAPIFKRRSEVVRGADE-PTEEEIKKGEAADENEKKEPTSSESKKQEG 157
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 184 SPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALD 363
+P K+ E AE+ +D + DAEE S+ G T KKE +++ AL+
Sbjct: 3 NPKKRAEKAEA------AKSRKQDEEKKKKDAEEDEKWSK-GVKTNKKEQEAEKRKAALE 55
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 157 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 270
E +ESP+K P KK + E T + SP E+
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVES 929
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 106 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 264
+ A KK A E + + + K++ AK++EAA+ N + P+D+PA
Sbjct: 80 EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPA 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,518
Number of Sequences: 5004
Number of extensions: 41007
Number of successful extensions: 239
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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