Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2001
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.3  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -3

Query: 310 HRSQMHR--CFLRHHHFQQANLLGLHRYHSL 224
           H+ Q+ R   FLR    Q  N  GLH  H L
Sbjct: 110 HKEQLSREQRFLRRRLEQLTNQTGLHGLHGL 140


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 133 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENG 234
           +P    ++ P  S     PAK   AA    K NG
Sbjct: 512 SPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNG 545


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +1

Query: 208 AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 312
           A +N   N  +    +   +NG+   +++ + NGD
Sbjct: 237 ASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 211 ESNGKENGTDEAPEDSPAENGDAEESNDASENGD-ATEKKETG 336
           +++ K+NG  +          +  + ND  +NG+   + K  G
Sbjct: 475 QNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNG 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,496
Number of Sequences: 438
Number of extensions: 2725
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)