Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2000
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 73 4e-14
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 30 0.23
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.41
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 28 0.95
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.3
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 28 1.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.2
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 27 2.9
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 3.8
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 26 3.8
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 3.8
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 3.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 3.8
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 26 3.8
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 5.1
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 6.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 6.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 8.8
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 8.8
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 72.5 bits (170), Expect = 4e-14
Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Frame = +3
Query: 45 PAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQ 224
P P P T + G P G G+ A R P+ +Q RP + P +
Sbjct: 509 PMPMYPGMPTQFPAGGPAP--GYPGMNA-----RGPVPAQG-RPMMMPGSVPSAGPAEAE 560
Query: 225 PAVHIQGQ-EPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSEL 401
+ G E T+ LAA P + +KQ+LGE L+P + L+GKITGMLLE+ NSEL
Sbjct: 561 AVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSEL 620
Query: 402 LHMLEHAESLKAKVDEAVAVL 464
L +LE +L +V+EA+ VL
Sbjct: 621 LELLEDDSALNERVNEAIGVL 641
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 459 QQQLHLL*LSETLHVLTYEEVLNYQFPKAYQLFSQPNQGAFSE 331
QQQ H++ + E +H + E + K L Q +GAF E
Sbjct: 249 QQQAHIVRMEELIHAVEKERKTETDYMKKESLSEQKERGAFME 291
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.41
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 33 PTYRPAPRAPAQSTIRTSLGA--RPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMR 206
P P P P+ T+ + + RPI A ++ +PPL SSR + N +
Sbjct: 251 PAPPPIP-PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKK 309
Query: 207 NPPAPQP 227
PP P P
Sbjct: 310 RPPPPPP 316
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 138 SIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQE 251
SI P++S +R + ++ PN N P A + G+E
Sbjct: 132 SIENPVLSFITRKGSSRHAPNNSNIQPPSAAPPVPGKE 169
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 0.95
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 194 TKHAQPTSSTTSSA--YPRTRTSDLYYACSSTTPGTETDAWGTTVSTYS 334
+ H QPTS+T+SS+ YP +R + A SS++P + TT S S
Sbjct: 236 SSHLQPTSATSSSSRLYP-SRPAPTPPASSSSSPLLSSQTVKTTTSNAS 283
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/61 (32%), Positives = 21/61 (34%)
Frame = +3
Query: 48 APRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQP 227
AP PA S + P Q AA PP Q P Y PN N QP
Sbjct: 71 APATPAASASSAAPAPAPAASQNRAYGAAPQPYPP---QGGYPQQPYYYPNQPNYYPAQP 127
Query: 228 A 230
A
Sbjct: 128 A 128
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 270 LAAAPLQEQKQMLGERLF-PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVD 446
L +A +Q+ +M G+ F P ++R H D GK + + LLH L + K++
Sbjct: 290 LESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQFATSFKIE 349
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 2.2
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +3
Query: 6 AASAYANMQPTYRPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRP-AN 182
A + A T AP +TI+ + +AAS P +S+ S P AN
Sbjct: 1028 APAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAAS-SPSNISKPSAPVAN 1086
Query: 183 YKYTPNMRNPPAPQPAVHIQGQE 251
P+ PP P P ++ ++
Sbjct: 1087 NVSKPSAVPPPPPPPPAEVEKKD 1109
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 105 TGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP 215
T Q +A++A S P +Q SRPA P+ PP
Sbjct: 548 TTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPP 584
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 330 IQRMHPDLAGKITGMLLEID-NSELLHMLEHAESLKAKVDEAV 455
+QR++P ++ G LL+ID + EL+ L + + VDE V
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELV 843
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 150 PLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGER 317
PL S++ ++ PN R+ +V + +EP + + A PL + + L +R
Sbjct: 12 PLESENESSLTSRFLPNKRDGGKDNESVIPEKEEPDLNEPVLAVPLPKSRYALTKR 67
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 18 YANMQPTYRPAPRAPAQSTIRTSLGARP-ITGQQGVAAAAASI 143
Y QP+Y P P+ +T+ + L P +T G + A+SI
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSI 313
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 42 RPAPRAPAQSTIRTSLGARPITGQQGVAAAAASIR----PPLVSQSSRPANY 185
R A AP ++ + TS + P T G A+ + PL SQSSR +NY
Sbjct: 17 RTAYAAPQRAAVDTSNVSPPSTQTGGYASKDTTSTYEGAQPLSSQSSRSSNY 68
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +2
Query: 137 IYSSTFSISKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGT 316
+ S+T S S SPS T P+SS++SS+ + +S + SS++ + + + +
Sbjct: 132 VSSTTSSSSSSSPSSS-STTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190
Query: 317 TVSTYSENA 343
+ S+ S ++
Sbjct: 191 SSSSSSSSS 199
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 177 ANYKYTPNMRNPPAPQPAVHIQGQEPL 257
AN + T NMR+P +HIQ +EP+
Sbjct: 815 ANCEKTNNMRDPLTSTIFLHIQPKEPI 841
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 188 IYTKHAQPTSSTTSSAYPRTRTSD 259
+YT H PT+ SSA P +T D
Sbjct: 1266 LYTIHQVPTTQRESSALPSDKTFD 1289
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 188 IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTP 289
++ + S TSS+ P++RTS+L S TP
Sbjct: 78 VFNSTSTTLPSATSSSVPQSRTSELSSTNSIPTP 111
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 6.7
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 143 SSTFSISKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTV 322
SS ++ K++ + T A +S T+SSA + TS A SST T +++
Sbjct: 50 SSVPTLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSL 109
Query: 323 STYS 334
++ S
Sbjct: 110 TSSS 113
Score = 25.4 bits (53), Expect = 6.7
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 143 SSTFSISKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACS--STTPGTETDAWGT 316
SST S S S S T A PTSS TSS+ T S+ + S S++ + T A T
Sbjct: 152 SSTTSSSLASSSTN--STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 209
Query: 317 TVSTYSENA 343
+ S S A
Sbjct: 210 SSSLSSTAA 218
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 6.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +3
Query: 132 AASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHI------QGQEPLTSTMLAAAPL 287
A S PP+ + S P K P++ PP P+P+V + G P+ +AA P+
Sbjct: 1078 APSGAPPVPAPSGIPPVPK--PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 174 PANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGE 314
P+N+ YT P + V I+ EP T+ A P + ++ E
Sbjct: 159 PSNFNYTRCCAQPICSECFVEIRRAEPHLPTVHANEPTPNEFDLISE 205
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 8.8
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 161 SKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAW--GTTVSTYS 334
S QSP+ + A + ST +S + +S YA S T+P + T + G+ + S
Sbjct: 95 SSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTSPTSSGPIGSNFDSAS 154
Query: 335 E-NAP 346
E N P
Sbjct: 155 EHNGP 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,656
Number of Sequences: 5004
Number of extensions: 48754
Number of successful extensions: 232
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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