Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1986
(700 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 55 7e-10
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 55 7e-10
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 52 7e-09
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 23 2.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 8.5
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 8.5
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 8.5
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 21 8.5
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 54.8 bits (126), Expect = 7e-10
Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 8/214 (3%)
Frame = +1
Query: 4 YKIKVTAVNFKGTSNVTPIEVIGWSGEDRPTQAPGNLSLSXVTSGTSAVLSWTPVAPESL 183
Y I+V A G S V E+I + RP P NL ++S + +++W+P PE
Sbjct: 978 YTIRVIAEGPAGRS-VPSAELIVRTEPQRPAGPPINLEARALSS-SEILITWSPPLPELR 1035
Query: 184 RGHFKGYKI---QTWTDAEEDRLKEIFVESDATSALVXXXXXXXXXXVRIL--AYNGRFN 348
G +G+ + +T + + + + A + ++ AYN +
Sbjct: 1036 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYTKYTLVVQAYNQVGS 1095
Query: 349 GPASDTLSFVTPEGQPSTV-RSFEAYPIGSSAMLLKWEKP--MEENGVLTGYKIYYSKVI 519
GP S+ L T E PS + S ++ + W+ P NG++ GYK++Y ++
Sbjct: 1096 GPLSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGYKLHYEPIL 1155
Query: 520 ATAVETPXERKKEIDPKFDRAKLAGLEPNTKYRI 621
A + E + L GL T Y I
Sbjct: 1156 ADMWRSVDEMEVRKTSALTTV-LTGLRKYTNYTI 1188
Score = 47.6 bits (108), Expect = 1e-07
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 7/174 (4%)
Frame = +1
Query: 4 YKIKVTAVNFKGTSNVTPIEVIGWSGEDRPTQAPGNLSLSXVTSGTSAVLSWTPVAPESL 183
Y + V A N G+ ++ ++ + ED P+ P ++ + +TS S +SW P
Sbjct: 1083 YTLVVQAYNQVGSGPLSE-PLLTQTMEDVPSIPPEDVRCAALTS-QSLQVSWQPPPNTHS 1140
Query: 184 RGHFKGYKIQ-------TWTDAEEDRLKEIFVESDATSALVXXXXXXXXXXVRILAYNGR 342
G +GYK+ W +E +++ + A + ++ +++LA+
Sbjct: 1141 NGIIQGYKLHYEPILADMWRSVDEMEVRK----TSALTTVLTGLRKYTNYTIQVLAFTRV 1196
Query: 343 FNGPASDTLSFVTPEGQPSTVRSFEAYPIGSSAMLLKWEKPMEENGVLTGYKIY 504
+G + T E P + + A+ + W P+E NG++T Y +Y
Sbjct: 1197 GDGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGIITKYNLY 1250
Score = 26.6 bits (56), Expect = 0.23
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +1
Query: 346 NGPASDTLSFVTPEGQPSTVRSFEAYPIGSSAMLLKWEKPMEENGVLTGYKIYY 507
N +D L + P + SS++LL W+ LTGY ++Y
Sbjct: 1388 NAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHY 1441
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 54.8 bits (126), Expect = 7e-10
Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 8/214 (3%)
Frame = +1
Query: 4 YKIKVTAVNFKGTSNVTPIEVIGWSGEDRPTQAPGNLSLSXVTSGTSAVLSWTPVAPESL 183
Y I+V A G S V E+I + RP P NL ++S + +++W+P PE
Sbjct: 974 YTIRVIAEGPAGRS-VPSAELIVRTEPQRPAGPPINLEARALSS-SEILITWSPPLPELR 1031
Query: 184 RGHFKGYKI---QTWTDAEEDRLKEIFVESDATSALVXXXXXXXXXXVRIL--AYNGRFN 348
G +G+ + +T + + + + A + ++ AYN +
Sbjct: 1032 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYTKYTLVVQAYNQVGS 1091
Query: 349 GPASDTLSFVTPEGQPSTV-RSFEAYPIGSSAMLLKWEKP--MEENGVLTGYKIYYSKVI 519
GP S+ L T E PS + S ++ + W+ P NG++ GYK++Y ++
Sbjct: 1092 GPLSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGYKLHYEPIL 1151
Query: 520 ATAVETPXERKKEIDPKFDRAKLAGLEPNTKYRI 621
A + E + L GL T Y I
Sbjct: 1152 ADMWRSVDEMEVRKTSALTTV-LTGLRKYTNYTI 1184
Score = 47.6 bits (108), Expect = 1e-07
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 7/174 (4%)
Frame = +1
Query: 4 YKIKVTAVNFKGTSNVTPIEVIGWSGEDRPTQAPGNLSLSXVTSGTSAVLSWTPVAPESL 183
Y + V A N G+ ++ ++ + ED P+ P ++ + +TS S +SW P
Sbjct: 1079 YTLVVQAYNQVGSGPLSE-PLLTQTMEDVPSIPPEDVRCAALTS-QSLQVSWQPPPNTHS 1136
Query: 184 RGHFKGYKIQ-------TWTDAEEDRLKEIFVESDATSALVXXXXXXXXXXVRILAYNGR 342
G +GYK+ W +E +++ + A + ++ +++LA+
Sbjct: 1137 NGIIQGYKLHYEPILADMWRSVDEMEVRK----TSALTTVLTGLRKYTNYTIQVLAFTRV 1192
Query: 343 FNGPASDTLSFVTPEGQPSTVRSFEAYPIGSSAMLLKWEKPMEENGVLTGYKIY 504
+G + T E P + + A+ + W P+E NG++T Y +Y
Sbjct: 1193 GDGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGIITKYNLY 1246
Score = 26.6 bits (56), Expect = 0.23
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +1
Query: 346 NGPASDTLSFVTPEGQPSTVRSFEAYPIGSSAMLLKWEKPMEENGVLTGYKIYY 507
N +D L + P + SS++LL W+ LTGY ++Y
Sbjct: 1384 NAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNGGASLTGYTLHY 1437
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 51.6 bits (118), Expect = 7e-09
Identities = 38/167 (22%), Positives = 72/167 (43%)
Frame = +1
Query: 4 YKIKVTAVNFKGTSNVTPIEVIGWSGEDRPTQAPGNLSLSXVTSGTSAVLSWTPVAPESL 183
Y + V A N G+ ++ E + E P Q P + + + +TS T + SW +
Sbjct: 1053 YSVVVQAFNKVGSGPMSE-ERRQHTAEGVPEQPPHDTTCTTLTSQTIRI-SWMSPPLSAA 1110
Query: 184 RGHFKGYKIQTWTDAEEDRLKEIFVESDATSALVXXXXXXXXXXVRILAYNGRFNGPASD 363
G GYK+ K+ + S ++ ++ +++LA+ +G S
Sbjct: 1111 NGVITGYKVIVIPSGGGIYTKDTKITS-SSETILHGLKKYTNYSMQVLAFTSGGDGVKSA 1169
Query: 364 TLSFVTPEGQPSTVRSFEAYPIGSSAMLLKWEKPMEENGVLTGYKIY 504
+ T + P + +A + S ++L+ W P + NGV+T Y +Y
Sbjct: 1170 PIHCQTEQDAPEAPIAIKALVMSSESILVSWRPPSQPNGVITQYTVY 1216
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 23.0 bits (47), Expect = 2.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 86 SSPDQPITSMGVTFDVPLKFTAVTLIL 6
+ PDQ I +TFD+P + + I+
Sbjct: 98 AEPDQKIEINFITFDIPCEHRGLVSII 124
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.4 bits (43), Expect = 8.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 204 QNPDLDRRRGGPAQGDLCG 260
+NP +R GGP G G
Sbjct: 402 ENPVTQKREGGPPTGATTG 420
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.4 bits (43), Expect = 8.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 204 QNPDLDRRRGGPAQGDLCG 260
+NP +R GGP G G
Sbjct: 422 ENPVTQKREGGPPTGATTG 440
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.4 bits (43), Expect = 8.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 204 QNPDLDRRRGGPAQGDLCG 260
+NP +R GGP G G
Sbjct: 371 ENPVTQKREGGPPTGATTG 389
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 21.4 bits (43), Expect = 8.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 148 VLSWTPVAPESLRGHF 195
VLSWTP S+ G F
Sbjct: 284 VLSWTPYGVMSMIGAF 299
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.312 0.130 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,174
Number of Sequences: 438
Number of extensions: 2352
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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