Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1983
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.2  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 204 KLRAWAR*APHFYTLML 154
           +L AWA+  PHF +L L
Sbjct: 244 QLVAWAKHIPHFTSLPL 260


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 204 KLRAWAR*APHFYTLML 154
           +L AWA+  PHF +L L
Sbjct: 244 QLVAWAKHIPHFTSLPL 260


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 135 IMAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQ 236
           I  W+F+ SKY       P     I+++  G+ Q
Sbjct: 2   IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 35


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 226 VHTRLMGTIFVHLLPLWPSTGSMLDQAWLFCLWT 327
           VH    G  FV L+ +      M    WL  +WT
Sbjct: 52  VHVNF-GLAFVQLINVNEKNQIMKSNVWLRFIWT 84


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 135 IMAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQ 236
           I  W+F+ SKY       P     I+++  G+ Q
Sbjct: 18  IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 51


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 135 IMAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQ 236
           I  W+F+ SKY       P     I+++  G+ Q
Sbjct: 75  IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,690
Number of Sequences: 438
Number of extensions: 3874
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)