Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1978
         (419 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D25217-1|BAA04947.3|  418|Homo sapiens KIAA0027 protein protein.       29   4.8  
CR456460-1|CAG30346.1|  377|Homo sapiens dJ355C18.1 protein.           29   4.8  
BC070042-1|AAH70042.1|  377|Homo sapiens megalencephalic leukoen...    29   4.8  
BC028425-1|AAH28425.1|  377|Homo sapiens megalencephalic leukoen...    29   4.8  
AL022327-5|CAO03521.1|  223|Homo sapiens megalencephalic leukoen...    29   4.8  
AL022327-4|CAI42687.1|  377|Homo sapiens protein ( MLC1 gene for...    29   4.8  
AF319633-1|AAK60119.1|  377|Homo sapiens putative potassium chan...    29   4.8  

>D25217-1|BAA04947.3|  418|Homo sapiens KIAA0027 protein protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 179 SNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASKINKTLVYMI 328
           S ++ N      IL++STF     C++    KL+ + SA  IN  L+ ++
Sbjct: 142 SRRNANVIPNFQILFVSTFAVTTTCLIWFGCKLVLNPSAININFNLILLL 191


>CR456460-1|CAG30346.1|  377|Homo sapiens dJ355C18.1 protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 179 SNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASKINKTLVYMI 328
           S ++ N      IL++STF     C++    KL+ + SA  IN  L+ ++
Sbjct: 101 SRRNANVIPNFQILFVSTFAVTTTCLIWFGCKLVLNPSAININFNLILLL 150


>BC070042-1|AAH70042.1|  377|Homo sapiens megalencephalic
           leukoencephalopathy with subcortical cysts 1 protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 179 SNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASKINKTLVYMI 328
           S ++ N      IL++STF     C++    KL+ + SA  IN  L+ ++
Sbjct: 101 SRRNANVIPNFQILFVSTFAVTTTCLIWFGCKLVLNPSAININFNLILLL 150


>BC028425-1|AAH28425.1|  377|Homo sapiens megalencephalic
           leukoencephalopathy with subcortical cysts 1 protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 179 SNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASKINKTLVYMI 328
           S ++ N      IL++STF     C++    KL+ + SA  IN  L+ ++
Sbjct: 101 SRRNANVIPNFQILFVSTFAVTTTCLIWFGCKLVLNPSAININFNLILLL 150


>AL022327-5|CAO03521.1|  223|Homo sapiens megalencephalic
           leukoencephalopathy with subcortical cysts 1 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 179 SNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASKINKTLVYMI 328
           S ++ N      IL++STF     C++    KL+ + SA  IN  L+ ++
Sbjct: 71  SRRNANVIPNFQILFVSTFAVTTTCLIWFGCKLVLNPSAININFNLILLL 120


>AL022327-4|CAI42687.1|  377|Homo sapiens protein ( MLC1 gene for
           megalencephalic leukoencnovel protein (FLJ41993)).).
          Length = 377

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 179 SNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASKINKTLVYMI 328
           S ++ N      IL++STF     C++    KL+ + SA  IN  L+ ++
Sbjct: 101 SRRNANVIPNFQILFVSTFAVTTTCLIWFGCKLVLNPSAININFNLILLL 150


>AF319633-1|AAK60119.1|  377|Homo sapiens putative potassium channel
           KIAA0027 protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 179 SNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASKINKTLVYMI 328
           S ++ N      IL++STF     C++    KL+ + SA  IN  L+ ++
Sbjct: 101 SRRNANVIPNFQILFVSTFAVTTTCLIWFGCKLVLNPSAININFNLILLL 150


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,314,525
Number of Sequences: 237096
Number of extensions: 780098
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)