Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1977
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    53   3e-09
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.0  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   5.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 52.8 bits (121), Expect = 3e-09
 Identities = 27/94 (28%), Positives = 45/94 (47%)
 Frame = +2

Query: 428 NGSYKYEYQIADGTHVXXEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYH 607
           +G+Y   ++ ++G      G     + E   +V +G  SYT  DG+  ++ Y AD+ G+ 
Sbjct: 39  DGNYINNFETSNGISHQESGQPKQVDNE-TPVVSQGSDSYTAPDGQQVSITYVADENGFQ 97

Query: 608 AYXDHLPTXPPVPAXIXAXLDQNAKEETAQAGSR 709
               H+PT PP+P  I   L+ NA       G +
Sbjct: 98  VQGSHIPTAPPIPPEIQRALEWNAAHPEEDDGGQ 131


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 194  PPIQWKPXNTWNAPP 238
            P + + P N WN PP
Sbjct: 1154 PHLPFTPFNFWNPPP 1168


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 392 VPVIKNEMYYGDNGSYKYEY 451
           V V +NE Y GD+    Y+Y
Sbjct: 109 VAVCRNEEYTGDDCQKTYQY 128


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 404 KNEMYYGDNGSYKYEYQIADGTHVXXEGYFTN 499
           KNE   G   +YK E  + D   V   G   N
Sbjct: 112 KNENCSGITSAYKIEIDMCDRLWVLDSGLINN 143


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 165 YALAAVLRYKLLLSR 121
           Y +  +LRYKLL+S+
Sbjct: 474 YEIKKLLRYKLLISQ 488


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 458  RFDTRICNCHYHHNTFHS*SLGRELL*SKSDMKAC 354
            R DT +    YHHN     ++ R  +  ++D K C
Sbjct: 1669 RLDTEMSTWGYHHNVNKHCTIHRTQV-KETDDKIC 1702


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,848
Number of Sequences: 438
Number of extensions: 4203
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)