Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1966
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   440   e-126
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   419   e-119
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   411   e-117
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   272   3e-75
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    86   4e-19

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  440 bits (1085), Expect = e-126
 Identities = 211/240 (87%), Positives = 215/240 (89%)
 Frame = +1

Query: 1   ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
           ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV VNKMDSTEPPYSE RFE
Sbjct: 109 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFE 168

Query: 181 EIKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 360
           EIKKEVSSYIKKIGYNP AVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCL
Sbjct: 169 EIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCL 228

Query: 361 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE 540
           IEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +TTE
Sbjct: 229 IEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTE 288

Query: 541 VKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPXGAADFTAQVIGLN 720
           VKSVEMHHEALQEAVPGD            ELRRGYVAGDSKNNPP GAADFTAQVI LN
Sbjct: 289 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 348



 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +3

Query: 720 HXGQISNGYXPVLDWHTGHIGXKFAXI 800
           H GQISNGY PVLD HT HI  KFA I
Sbjct: 349 HPGQISNGYTPVLDCHTAHIACKFADI 375


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  419 bits (1032), Expect = e-119
 Identities = 200/240 (83%), Positives = 210/240 (87%)
 Frame = +1

Query: 1   ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
           ADCAVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIV VNKMD T+PPYSE RFE
Sbjct: 109 ADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFE 168

Query: 181 EIKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 360
           EIKKEVSSYIKKIGYN  +VAFVPISGWHGDNMLEPS K PW+KGW+VERK+G ADGK L
Sbjct: 169 EIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTL 228

Query: 361 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE 540
           IEALDAILPP+RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V FAPA +TTE
Sbjct: 229 IEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTE 288

Query: 541 VKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPXGAADFTAQVIGLN 720
           VKSVEMHHEAL EA+PGD            ELRRGYVAGDSKN PP GAADFTAQVI LN
Sbjct: 289 VKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLN 348



 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +3

Query: 720 HXGQISNGYXPVLDWHTGHIGXKFAXI 800
           H GQISNGY PVLD HT HI  KFA I
Sbjct: 349 HPGQISNGYTPVLDCHTAHIACKFAEI 375


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  411 bits (1011), Expect = e-117
 Identities = 196/223 (87%), Positives = 200/223 (89%)
 Frame = +1

Query: 1   ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
           ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV VNKMDSTEPPYSE RFE
Sbjct: 52  ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFE 111

Query: 181 EIKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 360
           EIKKEVSSYIKKIGYNP AVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCL
Sbjct: 112 EIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCL 171

Query: 361 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE 540
           IEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +TTE
Sbjct: 172 IEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTE 231

Query: 541 VKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKN 669
           VKSVEMHHEALQEAVPGD            ELRRGYVAGDSKN
Sbjct: 232 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  272 bits (666), Expect = 3e-75
 Identities = 127/136 (93%), Positives = 129/136 (94%)
 Frame = +1

Query: 1   ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFE 180
           ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV VNKMDSTEPPYSE RFE
Sbjct: 36  ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFE 95

Query: 181 EIKKEVSSYIKKIGYNPXAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 360
           EIKKEVSSYIKKIGYNP AVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCL
Sbjct: 96  EIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCL 155

Query: 361 IEALDAILPPARPTDK 408
           IEALDAILPP RPTDK
Sbjct: 156 IEALDAILPPTRPTDK 171


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 85.8 bits (203), Expect = 4e-19
 Identities = 42/59 (71%), Positives = 43/59 (72%)
 Frame = +1

Query: 544 KSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPXGAADFTAQVIGLN 720
           KSVEMHHEAL EA+PGD            ELRRGYVAGDSKN PP GAADFTAQVI LN
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLN 59



 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +3

Query: 720 HXGQISNGYXPVLDWHTGHIGXKFAXI 800
           H GQISNGY PVLD HT HI  KFA I
Sbjct: 60  HPGQISNGYTPVLDCHTAHIACKFAEI 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,803
Number of Sequences: 438
Number of extensions: 4675
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)