Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1964
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 224 VSAQYKKRKDGTCSENFRRNRTVCPWRLRNVWNSQCEC 337
           V A   +  + T SEN R  R V   R +++   + EC
Sbjct: 224 VIASRHRNLEATESENVRPRRNVLIERAKSIRARRTEC 261


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 250 GWDVFRE---FPPKQDSVSMETQKCLEFTVRMLKVVAYLVTFIVVLGSGVI 393
           GW+V  E     P+   V  E    L + + +L +   L TF+ +LG+G++
Sbjct: 22  GWNVPAEELIHIPEHWLVYPEPNPSLHYLLALLYI---LFTFLALLGNGLV 69


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 142 SGGKRRDEGSDNSDDELTP 198
           +GG  RDE    S D  TP
Sbjct: 198 NGGAARDESKAGSTDASTP 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,004
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)