Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1954
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   1.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.4  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   5.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 17/68 (25%), Positives = 27/68 (39%)
 Frame = -1

Query: 713 NXXQDIMHILPELVKSVVLYRTFHYVRQLRMFNQSSCTMEIHFEEDXSTSKQYEIRIFSY 534
           N     +H + E  K V L         +R     +C M++H+    S +   EI  + Y
Sbjct: 125 NDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGY 184

Query: 533 H*LCYVLY 510
             L  V+Y
Sbjct: 185 TVLDVVMY 192


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/60 (21%), Positives = 23/60 (38%)
 Frame = -1

Query: 713 NXXQDIMHILPELVKSVVLYRTFHYVRQLRMFNQSSCTMEIHFEEDXSTSKQYEIRIFSY 534
           N  Q   HI     + + ++ +    R +R+   +SC M + +          EI  F Y
Sbjct: 102 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 161


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/60 (21%), Positives = 23/60 (38%)
 Frame = -1

Query: 713 NXXQDIMHILPELVKSVVLYRTFHYVRQLRMFNQSSCTMEIHFEEDXSTSKQYEIRIFSY 534
           N  Q   HI     + + ++ +    R +R+   +SC M + +          EI  F Y
Sbjct: 102 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 161


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 388 RYERASSIFPKLKSSAALFFEIFRDSRLFDSVIALAGRCR 269
           R +  S   P  +  AA   +IF   R ++  +++A  CR
Sbjct: 78  RRQPFSLFIPAHRKIAARLIDIFMGMRTYEDFLSVAVYCR 117


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/60 (21%), Positives = 23/60 (38%)
 Frame = -1

Query: 713 NXXQDIMHILPELVKSVVLYRTFHYVRQLRMFNQSSCTMEIHFEEDXSTSKQYEIRIFSY 534
           N  Q   HI     + + ++ +    R +R+   +SC M + +          EI  F Y
Sbjct: 41  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 100


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
          precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 56 WYQTSDTHINK 24
          WYQT  TH+ K
Sbjct: 40 WYQTLQTHMKK 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,621
Number of Sequences: 438
Number of extensions: 4229
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)