Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1952
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.78 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   1.4  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   1.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          24   1.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.6  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   9.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 551 PFFIINIKTYYCHKRCL 501
           PFF +NI T YC K C+
Sbjct: 287 PFFCVNIVTSYC-KTCI 302


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 650 IWVLMITDYQYSNQFQIHYLTN 585
           IWVL+   Y  +  ++ HYL N
Sbjct: 100 IWVLLEAKYDPTGAYKQHYLQN 121


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 650 IWVLMITDYQYSNQFQIHYLTN 585
           IWVL+   Y  +  ++ HYL N
Sbjct: 100 IWVLLEAKYDPTGAYKQHYLQN 121


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +2

Query: 326 WTKFATEIV*TMSTNYLIMRLAFIPQQSTNLR 421
           W+K    +   +  N++ + ++F+P++ST+ R
Sbjct: 53  WSKVCIVVRRKLEENWIHVDISFLPEKSTSSR 84


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 169 NVSLK*NKFYQWL*NNKN*NKIFRVLYYMLLFTYYFSVHLPI 44
           N ++  N  Y++  NN N N   + LYY + +     V +P+
Sbjct: 87  NRTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPVPVPV 128


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 169 NVSLK*NKFYQWL*NNKN*NKIFRVLYYMLLFTYYFSVHLPI 44
           N ++  N  Y++  NN N N   + LYY + +     + +P+
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPV 128


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 169 NVSLK*NKFYQWL*NNKN*NKIFRVLYYMLLFTYYFSVHLPI 44
           N ++  N  Y++  NN N N   + LYY + +     + +P+
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPV 128


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 169 NVSLK*NKFYQWL*NNKN*NKIFRVLYYMLLFTYYFSVHLPI 44
           N ++  N  Y++  NN N N   + LYY + +     + +P+
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPV 128


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 396 SHSRARISANIKLSNINYTNFKSGGRNY 479
           S S   I  N   +N NY N+     NY
Sbjct: 84  SLSNKTIHNNNNYNNNNYNNYNYNNNNY 111


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 127 NNKN*NKIFRVLYYMLLFTYYFSVHLPI*C 38
           N  N N  ++ LYY ++      V +PI C
Sbjct: 323 NYNNYNNNYKPLYYNIINIEQIPVPVPIYC 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,319
Number of Sequences: 438
Number of extensions: 4478
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)