Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1946
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.063
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.063
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 370 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 254
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 8   NMARGPXEAFEALKRSQIMXCWTNLAVCMHRXPSTGPHKLREC 136
           ++  GP    E LKR+ I+  +        R P+  P    +C
Sbjct: 709 SLMEGPRMTAEQLKRTDIIHNYIMRGEASPRSPNASPSPAEQC 751


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 418 IXRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 293
           + R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 73  LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 164 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 265
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 206 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 325
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,899
Number of Sequences: 438
Number of extensions: 2803
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)