Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1945
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 400 DYWDLDEFHPSAANFDKFDWT 462
           D+ D DEF P   N D  D++
Sbjct: 312 DHVDFDEFLPPPPNLDYHDYS 332


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 487 SGDNFLISPLGLKLALAILTEAATGNTKLELSSVLGFALDRREVRIKFS 633
           SG+N    P  +++ L + + A   + K+E S  L F     + R++F+
Sbjct: 50  SGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFN 98


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 577 LSSVLGFALDRREVRIKFSTIIDSLXKQNPXYVLNLGSR 693
           L SV  F     E  IK S +++     N  Y++  G+R
Sbjct: 215 LKSVPIFKNLPEETLIKISDVLEETFYNNGDYIIRQGAR 253


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 539 YSQRRPQVIRNWNCRRCLALLWI 607
           Y+ R   V+  W+   C++L++I
Sbjct: 388 YTWRHTSVLIGWSAFLCISLVYI 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,590
Number of Sequences: 438
Number of extensions: 4070
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)