Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1943
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 49  KEMLYDDFKPIVDLVLNNWTALQLAVEHGMGAPG 150
           ++M Y  F P   + + N T  Q   +HG G  G
Sbjct: 73  QDMPYPRFPPYNRMDMRNATYYQHQQDHGSGMDG 106


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 164 AVFSPPGAPIPCSTASC 114
           A   PP  P+P  T++C
Sbjct: 176 ASMDPPEPPVPTVTSAC 192


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 661 LECNXEVXTCKKYKLLV 711
           +EC  E+    +YKLL+
Sbjct: 470 IECGYEIKKLLRYKLLI 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,425
Number of Sequences: 438
Number of extensions: 3243
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)