Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1942
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   3.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.4  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +1

Query: 217 LNVKGSEESEGTERTVGSSQAPRFTKTDSEEFDDAPDLCM 336
           LN+  S+  +  E    +SQ PR T   +    D  ++ +
Sbjct: 71  LNIISSDHDDSDEEYAANSQPPRITSVPNTSRLDKSEISL 110


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 131 SNLLLCIHIISCPLTSYTWTTYWACKS 211
           S  L+ I+I  C L   +W ++W  +S
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSFWLDQS 268


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 131 SNLLLCIHIISCPLTSYTWTTYWACKS 211
           S  L+ I+I  C L   +W ++W  +S
Sbjct: 242 SYYLIQIYIPCCMLVIVSWVSFWLDQS 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,514
Number of Sequences: 438
Number of extensions: 4958
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)