Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1935
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +2

Query: 485 YKKNNSADIALYDHSIYSCIIPL 553
           YK + S D+  + + + +C++ L
Sbjct: 149 YKSSCSIDVEFFPYDVQTCVLKL 171


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 165 TNNNMLSNYQ*NYGTKKL 218
           +NN    NY  NY +KKL
Sbjct: 306 SNNYNYKNYNNNYNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 165 TNNNMLSNYQ*NYGTKKL 218
           +NN    NY  NY +KKL
Sbjct: 317 SNNYNYKNYNNNYNSKKL 334


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 510 ISAELFFLYFMFTYHKYYRSGFI 442
           IS  L     +FTY+K YR+  I
Sbjct: 213 ISFYLPLFVMVFTYYKIYRAAVI 235


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -2

Query: 552 NGM--MHEYIEWSYKAISAELF 493
           NG+  +HEY+++SY  + A  F
Sbjct: 98  NGLDNLHEYLKFSYPRMRAPSF 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,814
Number of Sequences: 438
Number of extensions: 4018
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)