Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1932
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -1

Query: 675 STEPHLHHQKRQXLLRWQHPHRSIQTHTHKRTL 577
           S  PH HH  +    R   PH     HT   T+
Sbjct: 315 SYHPHQHHPSQYHPHRGSSPHHQHGNHTMGPTM 347


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 36  YTIKWRKTM*RYNNCNPNYAS 98
           Y   WR     YNN +P Y+S
Sbjct: 84  YNRVWRPDTILYNNADPQYSS 104


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 241 KTQRFTYAILNLRY*DYCSEQSFTESRF 324
           KTQ   Y+ ++    +Y + + FT+ +F
Sbjct: 258 KTQNLYYSAMSSHNLNYVNTKQFTQGKF 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,758
Number of Sequences: 438
Number of extensions: 4551
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)