Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1929
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.83 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   1.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   1.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 311 QLCPTVSSNCNQIYLSVAFTCISI 240
           QL    +++C Q+Y +  FTC+ +
Sbjct: 213 QLVKNYTADCTQVYSTGNFTCLEV 236


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 347 EIRRRLPNFMGSQLCPTVSSNCNQIY 270
           +++ R  + MG  L  + S NCN+IY
Sbjct: 102 QLQERAQSVMGKCLPTSGSDNCNKIY 127


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 347 EIRRRLPNFMGSQLCPTVSSNCNQIY 270
           +++ R  + MG  L  + S NCN+IY
Sbjct: 102 QLQERAQSVMGKCLPTSGSDNCNKIY 127


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 332 LPNF-MGSQLCPTVSSNCNQIYLSVAFTCIS 243
           L NF M  Q CP +  +C  IY+     C++
Sbjct: 166 LRNFPMDRQSCPLILGSCKCIYVQSINLCMA 196


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 158 RLSVNEDRVGVLVTEITKAVS--QMLLLISYQHFICLSHSYII 36
           R+ +NED    LV+   K  +     +LI +  F+C+S  YII
Sbjct: 369 RIEMNEDDNTSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYII 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,086
Number of Sequences: 438
Number of extensions: 4174
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)