Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1926
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -1

Query: 471 WQDRCFVSSAPWRDHV 424
           W+D+ F++   W+D +
Sbjct: 195 WRDKVFITLPKWKDGI 210


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 380 NHGVPDHIGTRERSWTWSRQGA 445
           +HG+  H G R+    W +QGA
Sbjct: 156 HHGMAYHRGHRKDYERWVQQGA 177


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 215  QGVRRCSERHFMTRRHRAVDREDKAVHRREV*QDIQHS 328
            +G  R  +R  +    RAV R + +VHR      + HS
Sbjct: 1037 RGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHS 1074


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,627
Number of Sequences: 438
Number of extensions: 4034
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)