Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1918
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   5.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 386  LSETILLQSLQNSVKREPADIQDVFIQSQFIRI 288
            LSE +L Q++++     P D++   + SQ +++
Sbjct: 1098 LSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQV 1130


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 386  LSETILLQSLQNSVKREPADIQDVFIQSQFIRI 288
            LSE +L Q++++     P D++   + SQ +++
Sbjct: 1094 LSEPLLTQTMEDVPSIPPEDVRCAALTSQSLQV 1126


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 187 LNCFHRRAVMPSMSKRLHSESLTVPIALSY 98
           ++C +  AV P M+  L+ ESL VP   ++
Sbjct: 121 MDCRNIGAV-PKMATELYEESLFVPYITNF 149


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 121 SRIRNGVVWTWKA*RRVYESSLNV 192
           S   NG+V TW A  R   +SL +
Sbjct: 793 SHTPNGIVKTWIAHDRYLPNSLRI 816


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,724
Number of Sequences: 438
Number of extensions: 2330
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)