Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1908
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.0  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.3  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 682 VAALXEDLHEVVCEVTXGPSPDAGWR 605
           ++A   D  E+ C+VT  P P   WR
Sbjct: 320 ISARVGDNVEIKCDVTGTPPPPLVWR 345


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -3

Query: 736 SFFPDVTNDFPLAGGSXRVAALXEDLHEV----VCEVTXGPSPDAG 611
           S  PD++ DF + GG    A +   L EV    V  +  GP   AG
Sbjct: 62  SRIPDLSYDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDEPAG 107


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 570 VGDPVAGVQHDTGGTTXRVQREHGLDGDVHG 478
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 667  EDLHEVVCEVTXGPSPDAGWRGGV 596
            +DL +   +VT  P P   W G +
Sbjct: 986  DDLDQHTLKVTWKPPPREDWNGEI 1009


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 130 GMCKAGFAGD 159
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,046
Number of Sequences: 438
Number of extensions: 5302
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)