Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1894
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 336 RAAWSSAVRCSTTASGFRFGAFAXPIAFLXLRGPPKPPWPSTKMC 202
           RAA    +  S+ A G RFG          + GPP PP P    C
Sbjct: 412 RAASKEDLSPSSLADGARFGGSCL------IHGPPLPPLPLHTEC 450


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 336 RAAWSSAVRCSTTASGFRFGAFAXPIAFLXLRGPPKPPWPSTKMC 202
           RAA    +  S+ A G RFG          + GPP PP P    C
Sbjct: 412 RAASKEDLSPSSLADGARFGGSCL------IHGPPLPPLPLHTEC 450


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 131 GXSAVAIXNSEIFQNKQLVCRTHQHIFVL 217
           G   VAI ++   +++Q +CR   H F L
Sbjct: 718 GPRGVAIVSASTARSEQFLCRYEAHCFAL 746


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 123 WTRAXAPWPLXTVKYSKISNWY 188
           W +  A W   +  Y +++NWY
Sbjct: 654 WLQVLALWLNHSPNYDQVTNWY 675


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 211  ENVLVGSAYQLLILEYFTVXNG 146
            EN+L GS YQ+ +  Y  +  G
Sbjct: 1425 ENLLCGSRYQIYVTAYNGIGTG 1446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,447
Number of Sequences: 438
Number of extensions: 3672
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)