Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1888
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.8  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 563 LWANSRSTPRSEASSLISVC 622
           LW +SRST R  A+S+  +C
Sbjct: 274 LWLDSRSTERMIAASVNLIC 293


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -2

Query: 89  PLVGCPSPEPHNPIR-----SRSISLYVH 18
           PL+   +PE H+PIR     SRS+ L  H
Sbjct: 71  PLLRFENPETHHPIRHGRRQSRSMDLNAH 99


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 363 SVHNWHHFSHVIRDETVEQMLIA 295
           SVH+ HH   V RD   E +L+A
Sbjct: 21  SVHHCHHNGVVHRDLKPENLLLA 43


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 137 WRSPSKSVSSWASMGCYHHELRRKRSRLNYASSRSTDT 250
           WR P  ++    +   Y  EL   R+ L  ++  +TDT
Sbjct: 37  WRKPKPAMVEEKTQLRYLEELNALRTELGASTKLATDT 74


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 131 RVWRSPSKSVSSWASMGCYHHELRR 205
           R WR+PS  VS ++       +L R
Sbjct: 281 RYWRTPSVVVSDYSDYSYLDEKLER 305


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 122 PGCLRWSRPERPLV 81
           P   +W  P RP+V
Sbjct: 837 PNLTKWGNPNRPIV 850


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,956
Number of Sequences: 438
Number of extensions: 5706
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)