Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1883
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 430  KPMEDTIYADEDQDLSTLE 486
            +P+ + IY+  D D STLE
Sbjct: 1328 RPLSEHIYSSIDSDYSTLE 1346


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 91  HALIPDPITMYTQKETMKEVKDASKNL 171
           HAL+ DP+  + ++ T+ ++ D  +N+
Sbjct: 177 HALLKDPVKEFWERRTL-QISDGIENI 202


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 91  HALIPDPITMYTQKETMKEVKDASKNL 171
           HAL+ DP+  + ++ T+ ++ D  +N+
Sbjct: 230 HALLKDPVKEFWERRTL-QISDGIENI 255


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +1

Query: 394  NQKYNNKHFNDFKPMEDTIYADEDQD-LSTLETADKEEDKDKSNYDSLEKL 543
            N   NN  FND K   +   A+ D+D L           KD    + + KL
Sbjct: 1866 NHDQNNSSFNDSKESNEISEAECDRDQLVNRNYGVNARGKDGMTTEEMRKL 1916


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 302 ITRTSNANSSPMIVAVTVTTQA 237
           ++RTS A   P  VA TVT+ +
Sbjct: 720 VSRTSTAGQFPTNVATTVTSMS 741


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 193 ASQNHHPSSSWTHPSL 146
           +S +HH S SWT   +
Sbjct: 401 SSSHHHGSKSWTQEDM 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,868
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)